Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060221.seq
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    28   7.4  
04_03_0651 - 18417856-18418109,18418203-18418314,18418579-184186...    27   9.8  
02_01_0594 - 4413016-4413091,4413201-4413268,4413387-4413482,441...    27   9.8  

>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 499 RSXHSXPIRTKXSSEWVFDGVKAPNIGPGP 410
           RS HS P     S +W+ D  K P + P P
Sbjct: 420 RSVHSYPCWDLISIKWIIDIPKLPQLCPSP 449


>04_03_0651 -
           18417856-18418109,18418203-18418314,18418579-18418631,
           18418910-18418988,18419077-18419213,18419295-18419405,
           18419509-18419561,18420265-18420326
          Length = 286

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 400 CLDQDQDQCLGPLPHQKPIR 459
           CL+QD D  LG L +Q P+R
Sbjct: 47  CLNQDDDDLLGLLGNQTPLR 66


>02_01_0594 -
           4413016-4413091,4413201-4413268,4413387-4413482,
           4413600-4413689,4413760-4413886,4413983-4414038,
           4414203-4414379,4414464-4415057
          Length = 427

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 419 SWSWSKHEVRRGSWWMIKRSRTLVVRPISPIVISKCIAVXVXPYLSS 279
           +W  S +E    S W    +R L+ RP+ P+ + +C  +     L++
Sbjct: 137 AWDLSDNEAAPASSWATLPNRALLCRPL-PLDVGRCTCIIAKETLAA 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,749,182
Number of Sequences: 37544
Number of extensions: 292489
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)