Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060221.seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    31   0.50 
At3g18790.1 68416.m02387 expressed protein                             29   3.5  
At2g34380.1 68415.m04209 expressed protein                             29   3.5  
At1g24450.1 68414.m03080 ribonuclease III family protein contain...    28   6.2  

>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 482 AHPDQXLFRMGF*WGKGPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPISP 330
           A+  Q L +  F  GK  + W WSW +  +    W +  R++  VV+PI P
Sbjct: 181 ANATQYLGQASFNLGK--ESWGWSWKERWIAARPWEI--RAQCYVVKPIKP 227


>At3g18790.1 68416.m02387 expressed protein
          Length = 300

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 252 LTEEPPRLPRRKIRXNXYSNAFGNYNGGYWSDDQG 356
           L E+PP L +RK R + Y     +Y  GY  D+ G
Sbjct: 142 LFEKPPELRKRKTRYDIYKRIDASYY-GYRDDEDG 175


>At2g34380.1 68415.m04209 expressed protein
          Length = 509

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 434 GPKHWSWSWSKHE-VRRGSWWMIKRSRTLVVRPISPIVISKCIAVXVXPYLSSRKSR 267
           GP++ S  WS    V R   + +    T +  P  P +ISKC++    PY + R+ R
Sbjct: 152 GPEYTSTDWSLTSLVIRSIEFQVSLMITFIRFP--PWLISKCLSFVFDPYRTMRRGR 206


>At1g24450.1 68414.m03080 ribonuclease III family protein contains
           similarity to Swiss-Prot:P51837 ribonuclease III (EC
           3.1.26.3) (RNase III) [Coxiella burnetii]
          Length = 191

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 295 ITXTAMHLEITMGDIGLTTKVLDRLIIHQXPLRTSC-LDQDQ 417
           I  TA+ L+    DI +++K L RLI     + +SC LD D+
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,820
Number of Sequences: 28952
Number of extensions: 242245
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)