Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060220.seq
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    27   2.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   2.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.3  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.9  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 479 SVTDLITYRAPPTRRGRAAHQPSSTPSSWRVTSPTAFREVIKDLREQLQR 628
           S+    T +AP T  G   HQ ++  S   V++  +  +V K+  + +QR
Sbjct: 103 SIISKETSQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQR 152


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 530 AAHQPSSTPSSWRVTSPTAFREVIKDLREQLQRLP 634
           ++ QP STP+     SP+A ++ ++     +Q+ P
Sbjct: 38  SSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTP 72


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 328 NPVLSHG-GLLLDRYGEPPRLREAILRC 408
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 215 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 108
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 488 DLITYRAPPTRRGRAAHQPSSTPSSWRVTSPTAFREVIKDLREQLQRL 631
           D +T      R  + + +  +    W+V    A+    KDLR++LQ+L
Sbjct: 146 DYLTITGRSGRTLKLSKEWKNPSKKWKVGCKLAYEFFPKDLRKRLQKL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,919
Number of Sequences: 5004
Number of extensions: 46825
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)