Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060220.seq
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    56   3e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   3e-07
02_02_0235 + 8114606-8114806,8116530-8116692,8116785-8116887,811...    33   0.21 
04_04_0978 - 29856872-29858023                                         29   3.4  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    29   3.4  
07_03_0574 - 19629875-19631032                                         28   7.8  
05_05_0221 - 23385626-23386702                                         28   7.8  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +2

Query: 281 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 460
           C   + +QI  E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 461 RG---KLTGSVTDLITYRAP 511
           RG   +L   VT L  +  P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +2

Query: 314 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 484
           E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KLI Y  MRG   +L   V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 485 TDLITYRAP 511
           T L  +  P
Sbjct: 194 TPLTEFDHP 202


>02_02_0235 +
           8114606-8114806,8116530-8116692,8116785-8116887,
           8118584-8118650,8119923-8120486
          Length = 365

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 398 FFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPPTRRGRAAHQPSSTPSSWRVTS 577
           F  A     EH    +D+  M G     V D+  +R P    G +     S+P SW   +
Sbjct: 219 FSCAVAAMAEHQPPSMDFSYMAGSSAFPVFDM--FRRPCNIAGGSMCNLESSPESWSGIA 276

Query: 578 PTAFREVIKD 607
           P+  REV+++
Sbjct: 277 PSCSREVVRE 286


>04_04_0978 - 29856872-29858023
          Length = 383

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 458 MRGKLTGSVTDLITYRAPPTRRGRAAHQPSSTPSSWRVTSPTAFREVI 601
           +RG++ GS +    Y       GR  H  S +  SW V+ P+   E +
Sbjct: 89  LRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETL 136


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 341 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 457
           A+  YF + TV  P  A  FF +   +RE  T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151


>07_03_0574 - 19629875-19631032
          Length = 385

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 350 PPWLSTGLTRPLPPGXXXXXXXXXSAPW*ATHPDGDG-ADVTLCS 219
           PP+   G+ RPLP           +  W  T P  DG A V  CS
Sbjct: 164 PPYADDGIGRPLPGSRVTALAVVGAGIWTTTAPAEDGVASVRPCS 208


>05_05_0221 - 23385626-23386702
          Length = 358

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 232 TSAPSPSG*VAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPPRLREAILRCC 411
           T+AP  S   +   ++L+    E     S  V   L HG  L   +G    L   ILRCC
Sbjct: 13  TAAPVASPAASSMASELMAQGRE-----SAAVLEALLHGASLPPAHGGAHALAAEILRCC 67

Query: 412 D 414
           D
Sbjct: 68  D 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,047
Number of Sequences: 37544
Number of extensions: 380927
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)