Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060220.seq
         (671 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           25   2.2  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   3.8  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   5.0  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   5.0  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   6.6  
AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.           23   8.8  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           23   8.8  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           23   8.8  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 490 PHHVQGPANTSWESGASALEHALKLESDVTNSIPGGHQRPARAAST 627
           P    GP+  SW SGA ++       + + ++  GG Q+ AR +S+
Sbjct: 216 PSRNSGPS--SWMSGAGSVGGPSSAAAAMLSASSGGQQQHARLSSS 259


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 474 QAP*PTSSRTGPRQHVVGERRISPRARPQAGE*RHQQ 584
           Q P     +   +Q   GER + P+ R Q  + +HQQ
Sbjct: 277 QRPRQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQ 313


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 277 DLLQHDEETDPGGSGRVNPVLS 342
           D LQ +E   P G+GR+  V S
Sbjct: 98  DQLQQEETDAPAGAGRIRKVRS 119


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 503 RAPPTRRGRAAHQPSSTPSSWRVTSP 580
           R+PP RR   + +P+S P S   + P
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTSKP 297


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 542  PSSTPSSWRVTSPTAFREVIKDLREQL 622
            PS T    RVT  T+ REVI  + +QL
Sbjct: 1544 PSGTSLKLRVTPKTSAREVIDLVVKQL 1570


>AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 616 AASTTTTWSD 645
           A++TTTTWSD
Sbjct: 200 ASTTTTTWSD 209


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 616 AASTTTTWSD 645
           A++TTTTWSD
Sbjct: 199 ASTTTTTWSD 208


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 616 AASTTTTWSD 645
           A++TTTTWSD
Sbjct: 199 ASTTTTTWSD 208


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,365
Number of Sequences: 2352
Number of extensions: 12501
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)