Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060220.seq
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    52   4e-07
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    46   2e-05
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    29   2.3  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    27   9.2  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 27/58 (46%), Positives = 35/58 (60%)
 Frame = +2

Query: 293 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 466
           + KQI  E+ AS  YL+M  YF  D V  P  AK F + + EEREHAT+L+    +RG
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG 73


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%)
 Frame = +2

Query: 293 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 466
           + KQI  E+ AS  YL+M A+F  D +     AK F + + EER HAT+L+    +RG
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG 73


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 152 SYNHRFFDDIQKNMCS*KQ*LYKSSLY 72
           SYNHRFF  I K++ S K+ LYK+ ++
Sbjct: 99  SYNHRFF--IHKDISSDKKFLYKNDIF 123


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 506 APPTRRGRAAHQPSS-TPSSWRVTSPTAFREVIKDLREQLQRLPPGPTTWSGEXP 667
           APP     A   P++ TP ++  T+P     +   + +Q   LPPGP    G+ P
Sbjct: 313 APPATAPPATATPATQTPRTYSTTTP-----IKTTVPQQWTTLPPGPEPTPGQGP 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,024
Number of Sequences: 27780
Number of extensions: 281180
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)