Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060220.seq
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 52 3e-07
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 49 2e-06
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ... 47 1e-05
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin... 47 1e-05
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy... 40 0.002
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 32 0.30
At4g39380.1 68417.m05574 expressed protein 31 0.92
At5g13330.1 68418.m01533 AP2 domain-containing transcription fac... 29 2.1
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 29 3.7
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 28 4.9
At5g54430.1 68418.m06779 universal stress protein (USP) family p... 27 8.6
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +2
Query: 281 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 460
C + +QI E S Y AM AYF D + G AK F +++ EEREHA KL++Y
Sbjct: 97 CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156
Query: 461 RG 466
RG
Sbjct: 157 RG 158
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +2
Query: 281 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 460
C + +QI E S Y A+ AYF D V G AK F +++ EEREHA L++Y
Sbjct: 95 CEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNK 154
Query: 461 RG 466
RG
Sbjct: 155 RG 156
>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
subunit cowpea2 precursor GI:2970654 (Vigna
unguiculata); contains Pfam profile PF00210:
Ferritin-like domain
Length = 253
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/55 (45%), Positives = 30/55 (54%)
Frame = +2
Query: 302 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 466
QI E S Y A+ AYF D V GFAK F D++ EER HA ++Y RG
Sbjct: 96 QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRG 150
>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
[Arabidopsis thaliana] GI:1246401, GI:8163920
Length = 255
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 290 MMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 466
++ +QI E S Y +M AYF D V G AK F +++ EER HA K ++Y RG
Sbjct: 97 VINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRG 155
>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
hypothetical protein F9F8.14 - Arabidopsis thaliana,
EMBL:AC009991
Length = 355
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 305 IQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDY 451
I E S Y A+ AY D V GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = +1
Query: 382 RLREAILRCCD*RTRARDQAH*LPAHEGQADRLRNRPHHVQGPANTSWESGASALEHALK 561
RL EAI R T + D L HE Q + + H G A+T AL
Sbjct: 368 RLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEASGVADTRKVELEDALSKLKN 427
Query: 562 LESDV 576
LES +
Sbjct: 428 LESTI 432
>At4g39380.1 68417.m05574 expressed protein
Length = 518
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 457 HEGQADRLRNRPHHVQGPANTSWESGASALEHALKLESDVTNSIPGGHQRPARAASTTTT 636
H+GQ + N+ + GP W+ G ++L L G H + + A + T
Sbjct: 239 HDGQVESTENKINDGSGPTLLFWDDGLTSLSIGGLLSEVSLKGNFGNHCKNSNAGNANAT 298
Query: 637 -WSDYL 651
W D L
Sbjct: 299 LWEDNL 304
>At5g13330.1 68418.m01533 AP2 domain-containing transcription factor
family protein similar to AP2 domain containing protein
RAP2.6, Arabidopsis thaliana, EMBL:AF003099; contains
Pfam profile PF00847: AP2 domain
Length = 212
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 484 NRPHHVQGPANTSWESGASALEHALKLESDVTNSIPGGHQRPARAASTTTTW 639
N P VQGP T+ + HA + S+ NS P RP ++TTT+W
Sbjct: 93 NFPERVQGPTTTT------TISHAPRGVSESMNSPP---PRPGPPSTTTTSW 135
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 378 APASRSYSSMLRLKNASTRPSSLTTCS*GAS*QAP*PTSSRT 503
A A +Y SML +NA P+S T G S Q P P S+++
Sbjct: 558 AAALTNYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTPNSNQS 599
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 538 SALEHALKLESDVTNSIPGGHQRPARAASTTTTWSDYL 651
S L+ L+ +SDV IP GH++ R +T T D+L
Sbjct: 372 SQLQVELENQSDVMRYIPNGHKKALRQQNTAET-KDHL 408
>At5g54430.1 68418.m06779 universal stress protein (USP) family
protein low similarity to early nodulin ENOD18 [Vicia
faba] GI:11602747, ER6 protein [Lycopersicon esculentum]
GI:5669654; contains Pfam profile PF00582: universal
stress protein family
Length = 242
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 509 PPTRRGRAAHQPSSTPSSWRVTSPTA 586
PP+ R H SSTPSS +PTA
Sbjct: 19 PPSPRHSHHHHSSSTPSSAATPTPTA 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,938
Number of Sequences: 28952
Number of extensions: 266658
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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