Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060219.seq
(652 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF592537-1|ABQ95983.1| 593|Tribolium castaneum beta-N-acetylglu... 25 0.41
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.8
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.8
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.8
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.8
EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetyla... 22 5.0
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 21 6.7
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 21 6.7
AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less prot... 21 6.7
S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Triboliu... 21 8.8
DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8 prot... 21 8.8
>EF592537-1|ABQ95983.1| 593|Tribolium castaneum
beta-N-acetylglucosaminidase NAG2 protein.
Length = 593
Score = 25.4 bits (53), Expect = 0.41
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 355 APAPWARGSPW--PAGMAYVGKYFDQAPYRVYCL 450
AP+ G W AG+ + DQ P+R YC+
Sbjct: 306 APSHAGNGWQWGPDAGLGNLSVCIDQQPWRSYCI 339
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 93 KVWSPDIMCVNGGD 134
K+W PD++ N D
Sbjct: 84 KLWKPDVLMYNSAD 97
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 93 KVWSPDIMCVNGGD 134
K+W PD++ N D
Sbjct: 84 KLWKPDVLMYNSAD 97
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 93 KVWSPDIMCVNGGD 134
K+W PD++ N D
Sbjct: 84 KLWKPDVLMYNSAD 97
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 93 KVWSPDIMCVNGGD 134
K+W PD++ N D
Sbjct: 84 KLWKPDVLMYNSAD 97
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +3
Query: 93 KVWSPDIMCVNGGD 134
K+W PD++ N D
Sbjct: 84 KLWKPDVLMYNSAD 97
>EU019711-1|ABU25223.1| 534|Tribolium castaneum chitin deacetylase
1 protein.
Length = 534
Score = 21.8 bits (44), Expect = 5.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Frame = +2
Query: 80 LQTPQSLVTRHHVRQWRR*CLFSSSTQC 163
+Q P+++ + WR C+ + C
Sbjct: 465 IQNPRTITESKNFEPWREKCVVEGNPHC 492
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
protein.
Length = 2700
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 213 KNKSVGGSVSWRGDL 169
K K GG+V+W DL
Sbjct: 955 KTKGFGGAVAWTIDL 969
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 193 SADRFILSKGHAAPILYAAWARPGC 267
SA++FI ++ + +AW+ GC
Sbjct: 1495 SAEKFIEVSSNSITLHLSAWSDGGC 1519
>AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less
protein.
Length = 312
Score = 21.4 bits (43), Expect = 6.7
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -3
Query: 497 CSDSQMLPSAASPSPTRQYT 438
C D+++L A + SP+ ++T
Sbjct: 251 CRDNRLLVLAGTSSPSNRFT 270
>S73225-1|AAB30811.1| 327|Tribolium castaneum protein ( Tribolium
castaneum homeodomainprotein mRNA, complete cds. ).
Length = 327
Score = 21.0 bits (42), Expect = 8.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 387 AGRHGLRREVLRPGALQGVLPGGRRR 464
+GR R V +PGA QG +R
Sbjct: 205 SGRSPRTRRVKKPGAKQGAPTAEEKR 230
>DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8
protein.
Length = 496
Score = 21.0 bits (42), Expect = 8.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 613 ESVRSQLAGGWT 648
E V +Q AGGWT
Sbjct: 305 EIVEAQNAGGWT 316
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,928
Number of Sequences: 336
Number of extensions: 3164
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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