Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060219.seq
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    53   4e-08
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    29   0.77 
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   5.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.4  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.4  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   9.5  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   9.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.5  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 14/199 (7%)
 Frame = +1

Query: 52  NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 231
           N +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA 
Sbjct: 15  NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74

Query: 232 PILYAAWARPG----CSRWTS*RTCASWTRTWRATPPRDSTSWTXAPAPWARGSPWPAGM 399
            + Y      G           R   S T     T   D    T A  P  +G     G+
Sbjct: 75  VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLNIETGA-GPLGQGIASAVGL 133

Query: 400 AYVGKYFDQAPYR----------VYCLVGDGEAAEGSIWESLHFASPTSWTTWSVIFDVN 549
           A +GK    A Y            +C +GDG   EG   E+   A     +    ++D N
Sbjct: 134 A-IGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVSSEACSLAGHLKLSNLIAVWDNN 192

Query: 550 RLXQSEPTXLQHQLEVYRR 606
           ++     T +    +V +R
Sbjct: 193 KITIDGATSMSFDEDVEKR 211



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 273 LDELKNLRKLDSDLEGHP---TPRLNFVDVGTGSLGQGLAVA 389
           +++LK  R++ S   GHP    P LN ++ G G LGQG+A A
Sbjct: 90  IEDLKQFRQVGSKTPGHPETHNPDLN-IETGAGPLGQGIASA 130


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +1

Query: 409 GKYFDQAPYRVYCLVGDGEAAEG---SIWESLHFASPTSWTTWSVIFDVNRLXQSEPT 573
           G   D+    V C+VGDGEA  G   + W +  F  P        + ++N    SE T
Sbjct: 200 GAVLDRPDLIVTCVVGDGEAETGPTATSWHAHKFLDPAESGAVIPVLELNGYKISERT 257


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 333 RLNFVDVGTGSLGQGLAVAGRHGLRREVLRPGALQGVLPGGRR 461
           R    D G  ++GQ +++  RH  RR ++    L  +LP   R
Sbjct: 144 RCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIR 186


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 391  PATASPWPR-EPVPTSTKLSRGVGWP 317
            P  A P PR EPV T+TKL++ +  P
Sbjct: 943  PKEAPPPPRSEPVSTTTKLAKRITQP 968


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 457  DGEAAEGSIWESLHFASPTSWTTWSVIFDVNRLXQSEPTXLQHQLEVY 600
            +GEA E  +  +    S  S   W V   V RL Q+E T L   ++ +
Sbjct: 946  EGEAVEAIVTSNCVNLSENSIRAWLVSSAVERLIQNEYTTLCEMVDFF 993


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 433 RAPGRSTSRRRPCRPATAS 377
           R PGRS SRRR  RP+ ++
Sbjct: 205 RRPGRSRSRRRSRRPSPSA 223


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 44  ISPTN*ESTVLLLQTPQSLVTRHHVRQW 127
           ISP+N ES V+L   P  L+T   +  W
Sbjct: 309 ISPSNKESLVILFAAPVFLITLFAMFLW 336


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 476 PSAASPSPTRQYTL*GAWSKY 414
           PS  + SPT   T+  +WSKY
Sbjct: 245 PSDPNSSPTSSVTVSSSWSKY 265


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 160 MRYKISAPRDASADRFILSKGHAAPIL 240
           +R  I AP DASA  F +  GH    L
Sbjct: 295 IRTIIEAPEDASATYFAIRLGHTVAFL 321


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 650 SVHPPAS*DRTLSGARRYTSS*CCRXVGSDCXRRLTSKMTDQVVQLVGLAKCSDSQMLPS 471
           S+ PPAS   + S     T S     + ++    LTS  T +  +   L   +  + LPS
Sbjct: 252 SIEPPAS-SASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPS 310

Query: 470 AASPS 456
            ++PS
Sbjct: 311 NSTPS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,828
Number of Sequences: 5004
Number of extensions: 50106
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)