Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060219.seq
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 45 6e-05
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 44 1e-04
01_01_0846 - 6606054-6606239 34 0.085
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 30 1.8
11_04_0344 - 16590803-16591433,16591598-16591914,16592300-165923... 29 2.4
10_08_0116 + 14935582-14936089,14936850-14937188,14937914-149379... 29 3.2
04_04_1151 - 31284094-31284204,31284375-31284434,31284518-312845... 29 3.2
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 3.2
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 28 5.6
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 28 7.4
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 7.4
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 28 7.4
11_06_0174 - 20907202-20907258,20907875-20908024,20908293-209084... 28 7.4
08_02_0238 + 14665813-14668798,14669088-14669125 28 7.4
06_03_1158 - 28080330-28080647,28080726-28080949,28081213-280814... 28 7.4
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 28 7.4
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 28 7.4
02_05_0883 - 32481502-32483085 28 7.4
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 28 7.4
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 7.4
11_01_0066 - 536281-537196,537397-537452 27 9.8
09_04_0504 + 18180321-18181013 27 9.8
09_03_0040 + 11816056-11819069,11819837-11820428 27 9.8
08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790 27 9.8
07_03_1036 - 23430643-23431311,23431441-23431668 27 9.8
06_03_0941 + 26179682-26182327 27 9.8
04_04_1065 + 30529555-30530076 27 9.8
02_05_0814 - 31970558-31971126,31971242-31971413 27 9.8
02_02_0557 + 11470259-11472307 27 9.8
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +1
Query: 37 LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 216
L+ N +R +I A + SGHP A + +L+ MRY P + DRFILS
Sbjct: 84 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 143
Query: 217 KGHAAPILYA 246
GH + YA
Sbjct: 144 AGHGCMLQYA 153
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 276 DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAVA 389
++LK R+ S GHP V+V TG LGQG+A A
Sbjct: 166 EDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANA 204
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +1
Query: 31 EQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFI 210
E ++ N +R ++ + +KSGHP A + VLF +R+ P DRFI
Sbjct: 53 EVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFI 112
Query: 211 LSKGHAAPILYA 246
LS GH + YA
Sbjct: 113 LSAGHGCMLQYA 124
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 LDELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAVA 389
+D+LK R+ S GHP V+V TG LGQG A A
Sbjct: 136 MDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGFANA 175
>01_01_0846 - 6606054-6606239
Length = 61
Score = 34.3 bits (75), Expect = 0.085
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 GHPTPRLNFVDVGTGSLGQGLAVAGRHGLRR-EVLRPGALQGVLPGGRRRGS 470
G PR V G+G G+AV GR GLRR E GA G GR G+
Sbjct: 5 GWEEPRRCSVGKGSGGRSSGVAVLGREGLRRGEARAGGAWAGRRSAGRGAGA 56
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 123 NGGDNVCSLLPHNAVQDLR-ATRRFRRQIYSFQGSRSADPVRGVGEAGLFPLDELKNLRK 299
N G+ ++ A L ++R F+ I + +RS + GV A + PL +NLRK
Sbjct: 452 NDGNGALTVAAQQAGDALNTSSRHFQPPIVVMKPARSTEKQPGVSLASVDPLAGFRNLRK 511
Query: 300 LDS 308
L +
Sbjct: 512 LQA 514
>11_04_0344 -
16590803-16591433,16591598-16591914,16592300-16592395,
16592505-16592540
Length = 359
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 454 GDGEAAEGSIWESLHFASPTSWTTWSVIFDVNRLXQSEPTXLQ-HQLEVYRRAPESVRSQ 630
GDG AA + SLH+ S W V+ D L + L H+ + A + R+Q
Sbjct: 272 GDGSAAAAAARYSLHWVSEAHRNGWHVLLDATGLAAGDRLPLSLHRPDFVTCALDDARAQ 331
>10_08_0116 +
14935582-14936089,14936850-14937188,14937914-14937960,
14938175-14938264
Length = 327
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 430 APGRSTSRRRPCRPATASPWPREPVPTSTKLSRGVG 323
+P + + R C+ + A+P PR P+P + ++SRG+G
Sbjct: 149 SPVFTRAHGRFCKKSAAAPPPR-PLPRAHQISRGIG 183
>04_04_1151 -
31284094-31284204,31284375-31284434,31284518-31284595,
31284688-31284812,31284898-31285906,31286513-31286920,
31287323-31287400,31287524-31287934
Length = 759
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 387 AGRHGLRREVLRPGALQGVLPGGRRRGSRGQHLG 488
+GR G++R + + Q L RRRG+RGQ LG
Sbjct: 126 SGRQGVKRATAKAPSRQA-LAERRRRGARGQFLG 158
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 319 ATPPRDSTSWTXAPAPW 369
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 399 GLRREVLRPGALQGVLPGGRRRGSRGQ 479
G RR+ LRPG +GV G G +G+
Sbjct: 322 GCRRDALRPGGWRGVARWGAAAGQQGR 348
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -1
Query: 427 PGRSTSRRR----PCRPATASPWPREPVPTST 344
PG + RRR P T S WP P PT T
Sbjct: 164 PGEQSRRRRKKKTPVARKTGSSWPPPPTPTPT 195
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 445 NTPCRAPGRSTSRRRPCRPATASPWPREPVPTSTKLSRG 329
+TP A + RR P +T +P R P P S ++S G
Sbjct: 191 STPPSAKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTG 229
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 475 GSIWESLHFAS-PTSWTTWS--VIFDVNRLXQSEPTXLQHQLEVYRRAPESVR 624
G ++++H A W W ++ +VNRL + + VYR+ PE V+
Sbjct: 645 GGAYDAVHCARCRVPWHIWGGKLLLEVNRLLRPGGLFVWSATPVYRKTPEDVQ 697
>11_06_0174 -
20907202-20907258,20907875-20908024,20908293-20908414,
20908748-20908901,20909040-20909249
Length = 230
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +3
Query: 279 ELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAGR 395
EL N D L HP PRLN V G G+G V GR
Sbjct: 38 ELLNFMTYDR-LACHPGPRLNLV-AGPNGSGKGSLVLGR 74
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 25 DFEQLKDIANKLRIDSI-VATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAP 183
D+ + +AN R++ + +ATN + P+S S+A + L+ H +IS P
Sbjct: 445 DWSFMSSLANCTRLEVLSLATNKLQGSLPSSIGSLANTLGALWLHA--NEISGP 496
>06_03_1158 -
28080330-28080647,28080726-28080949,28081213-28081423,
28081536-28081708,28082093-28082156,28082353-28082514
Length = 383
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 433 YRVYCLVGDGEAAEGSIWESLHFASPTSWTTWSVIFDV--NRL-XQSEPTXLQHQLEVYR 603
Y C+V GE+ GS+ ASP WS+ + NRL + T + +VY
Sbjct: 296 YLTCCVVNVGESVRGSLRRDEPGASPRLQHAWSLQLSLIRNRLALLPDVTTSLNPPDVY- 354
Query: 604 RAPESVRSQLA 636
PES +S LA
Sbjct: 355 DLPESCQSYLA 365
>06_03_0635 - 22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 147 LLPHNAVQ-DLRATRRFRRQIYSFQGSRSADPVRGVGEAGLFPLDELKNL 293
LLPH D+R + Q+ SF G + + +RGVG GL L L++L
Sbjct: 1120 LLPHQLQNLDIRHCSKLILQLDSFVGDTTRNLIRGVG-GGLQYLRSLQSL 1168
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 213 KNKSVGGSVSWR-GDLVPHCVEEENRHYLRH 124
KN GGS S D V HC+ E + + RH
Sbjct: 653 KNVKNGGSFSMNLNDSVTHCIAAEKKDFARH 683
>02_05_0883 - 32481502-32483085
Length = 527
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 316 RATPPRDSTSWTXAPAPWARGSPWPAGMA 402
R PPRD SWT A A A+ PA A
Sbjct: 57 RRRPPRDVASWTSAIARPAKQGDLPAAAA 85
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 452 WATERQPRAASGSRCTLPALQAGQP 526
W +E P+A S SR +P +AG P
Sbjct: 346 WQSEADPKANSDSRWRVPLCRAGHP 370
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 106 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILY 243
PT +MA + +RYKISA D R +L H P ++
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVF 75
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 400 PCRPATASPWPREPVPTSTKLS 335
P P+TA+P P P PT+T+ S
Sbjct: 230 PPPPSTATPPPPSPTPTTTRAS 251
>09_04_0504 + 18180321-18181013
Length = 230
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 445 NTPCRAPGRS-TSRRRPCRPATASPWPREPVPTS 347
++P ++P RS S+RR P P P P PT+
Sbjct: 113 SSPAKSPKRSKNSKRRRVSPPPPQPVPAPPPPTT 146
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 199 RRKRLVARRSCTALCGRREQTLSPPLTHMMSGD 101
+R+ + A+RS LCGR PP T ++GD
Sbjct: 27 KRRAVSAKRSWPPLCGRFPAPPPPPPTAPVAGD 59
>08_02_0108 - 12615091-12615789,12616131-12616311,12616717-12616790
Length = 317
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 514 SWTTWSVIFDVN-RLXQSEPTXLQHQLEVYRRAPESVRSQL 633
SW +F +N R+ EP QH L + +R+ ES+R +
Sbjct: 174 SWEQLRDVFVLNFRVTYEEPKTQQHLLGIRQRSGESIREYM 214
>07_03_1036 - 23430643-23431311,23431441-23431668
Length = 298
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -3
Query: 512 VGLAKCSDSQML--PSAASPSPTRQY 441
VG++ CS +Q+L PS++ PSP Y
Sbjct: 90 VGMSPCSSTQLLSAPSSSFPSPVPSY 115
>06_03_0941 + 26179682-26182327
Length = 881
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = +1
Query: 367 WARGSPWPAGMAYVGKYF---DQAPYRVYCLVGDGEAAE 474
WA GS W +G V P RV L G EA E
Sbjct: 616 WAMGSQWSSGQLTVSNMHSITSNRPVRVLLLAGTAEAEE 654
>04_04_1065 + 30529555-30530076
Length = 173
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 449 WWATERQPRAASGSRCTLPALQAGQPG 529
+W T+ + +AA+ SR P + G+PG
Sbjct: 135 YWITDDEDQAATRSRAPAPGRRRGRPG 161
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 448 GNTPCRAPGRSTSRRRPCRPATASPWPREPVPTS 347
G+TP + + P P +P+P P+PT+
Sbjct: 141 GSTPSSPSSPTPTTPNPSTPTPTTPYPSTPMPTT 174
>02_02_0557 + 11470259-11472307
Length = 682
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 231 ADPVRGVGEAGLFPLDELKNLRKLDSDLEGHP 326
A P+ V G F L+ R ++ D+EGHP
Sbjct: 546 ASPLTDVFAFGAFLLEVTSGRRPVEQDIEGHP 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,928
Number of Sequences: 37544
Number of extensions: 454138
Number of successful extensions: 1951
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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