Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060219.seq
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0) 118 4e-27
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0) 82 3e-16
SB_22227| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8) 31 0.81
SB_54207| Best HMM Match : Sulfotransfer_1 (HMM E-Value=1.6e-34) 29 2.5
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09) 29 2.5
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09) 29 2.5
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40) 28 7.6
>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 548
Score = 118 bits (284), Expect = 4e-27
Identities = 61/134 (45%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
Frame = +1
Query: 220 GHAAPILYAAWARPGCSRWTS*RTCASWTRTWRATP-PRDSTSWTXAPAPWARGSPWPAG 396
GHAAPILYAAW G T + P PR S + A +G G
Sbjct: 1 GHAAPILYAAWMEAGLFDEAKLMTLRKFKSELEGHPVPRQSFT-DVATGSLGQGLSCACG 59
Query: 397 MAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASPTSWTTWSVIFDVNRLXQSEPTX 576
MAY K+FD+A YRV+ L+GDGEAAEG++WE++HFA IFDVNRL QS+PT
Sbjct: 60 MAYTAKHFDKASYRVFTLLGDGEAAEGAVWEAMHFAGYYKLDNLVAIFDVNRLGQSQPTS 119
Query: 577 LQHQLEVYRRAPES 618
L+H +E YR+ E+
Sbjct: 120 LEHDMETYRKRAEA 133
>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 562
Score = 82.2 bits (194), Expect = 3e-16
Identities = 40/96 (41%), Positives = 51/96 (53%)
Frame = +1
Query: 220 GHAAPILYAAWARPGCSRWTS*RTCASWTRTWRATPPRDSTSWTXAPAPWARGSPWPAGM 399
GHAAPILYAAW G T P +G GM
Sbjct: 1 GHAAPILYAAWCEAGLFSQDHLMTLRKIDSELEGHPVPRQVFTDVGTGSLGQGLSCACGM 60
Query: 400 AYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFAS 507
AY+GK+ D+A YRV+CL+GDGE+AEG++WE++ FAS
Sbjct: 61 AYMGKHIDKASYRVFCLLGDGESAEGAVWEAMSFAS 96
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/92 (44%), Positives = 50/92 (54%)
Frame = +3
Query: 255 EAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAGRHGLRREVLRPGAL 434
EAGLF D L LRK+DS+LEGHP PR F DVGTGSLGQGL+ A + + +
Sbjct: 13 EAGLFSQDHLMTLRKIDSELEGHPVPRQVFTDVGTGSLGQGLSCACGMAYMGKHIDKASY 72
Query: 435 QGVLPGGRRRGSRGQHLGVAALCQPYKLDNLV 530
+ G + G + YKLDNLV
Sbjct: 73 RVFCLLGDGESAEGAVWEAMSFASFYKLDNLV 104
>SB_22227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +3
Query: 255 EAGLFPLDELKNLRKLDSDLEGHPTP 332
EAGLF D L LRK+DS+LEGHP P
Sbjct: 13 EAGLFSQDHLMTLRKIDSELEGHPVP 38
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 220 GHAAPILYAAWARPG 264
GHAAPILYAAW G
Sbjct: 1 GHAAPILYAAWCEAG 15
>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1607
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 219 GSRSADPVRGVGEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTGS 365
G R VRG EAGLF ++E+ N +D D PR V+ GTG+
Sbjct: 301 GQRYCALVRGYNEAGLF-IEEMSNCVLIDQD-----APRAGTVNDGTGA 343
>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
Length = 1699
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 219 GSRSADPVRGVGEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTGS 365
G R VRG EAGLF ++E+ N +D D PR V+ GTG+
Sbjct: 247 GQRYCALVRGYNEAGLF-IEEMSNCVLIDQD-----APRAGTVNDGTGA 289
>SB_54207| Best HMM Match : Sulfotransfer_1 (HMM E-Value=1.6e-34)
Length = 349
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 425 WSKYFPT*AMPAGHGEPLAQGAGAXVHEVE 336
W KYFP + GE L + A +HEVE
Sbjct: 238 WLKYFPLSQIHVVSGEKLVKNPAAELHEVE 267
>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1806
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 217 WKE*ICRRKRLVARRSCTALCGRREQTLSPPLTHMMSGDQTLRRL*Q 77
W IC R L + C + G T++ PL H SGD + RL Q
Sbjct: 1205 WYNKICLRLELYGCKECFSPLGMENLTINSPLAH--SGDTSHARLMQ 1249
>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
Length = 460
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 IDSIVATNASKSGH--PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSK 219
+DS+ ASK P + E +S L H I P DA AD LSK
Sbjct: 289 LDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRPHDAQADACALSK 342
>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
Length = 415
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 IDSIVATNASKSGH--PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSK 219
+DS+ ASK P + E +S L H I P DA AD LSK
Sbjct: 244 LDSVKVVRASKKQEKSPFDSSFKKESLSALHGHLFGVPIDRPHDAQADACALSK 297
>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
Length = 1120
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 210 SFQGSRSADPVRGVGEAGLFPLDELKNLRK 299
S+ GSRS+ P+R + EA P E +N +K
Sbjct: 491 SYHGSRSSSPLRRLKEAMNAPFKEKRNKQK 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,498,970
Number of Sequences: 59808
Number of extensions: 439906
Number of successful extensions: 3368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3361
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -