Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060219.seq
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    27   0.39 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    27   0.39 
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           24   4.8  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           24   4.8  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   4.8  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   6.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   6.3  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   8.4  

>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 443 IAWWATERQPRAASGSRCTLPALQAGQPGPSSSM 544
           I W+  +R+ R AS S    P  +A  PG  SS+
Sbjct: 129 IRWYLNKRKIRNASASTTGPPDAEANAPGSGSSL 162


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 333 RLNFVDVGTGSLGQGLAVAGRHGLRREVLRPGALQGVLPGGRRRGSRGQHLGVAALC 503
           R   ++VG   +  G+A  GR  L +E  R    +   PG  R  S  Q +   A C
Sbjct: 772 RRQLINVGNSIIRYGVATWGRWVLDKETHRKSVQRAHRPGALRVASAFQTVSYDAAC 828


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 202 RFILSKGHAAPILYAAWARPGCSRWTS*RTCASWT--RTWRATPPRDSTSWTXAPAP 366
           RF  +   +AP   + W  P     T   T   WT   TW A  P  +T+W+  P P
Sbjct: 130 RFPTTTTTSAPTTPSQWTDP-----TITTTTPVWTDPTTWSA--PTTTTTWSDQPPP 179


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 202 RFILSKGHAAPILYAAWARPGCSRWTS*RTCASWT--RTWRATPPRDSTSWTXAPAP 366
           RF  +   +AP   + W  P     T   T   WT   TW A  P  +T+W+  P P
Sbjct: 130 RFPTTTTTSAPTTPSQWTDP-----TITTTTPVWTDPTTWSA--PTTTTTWSDQPPP 179


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 559 QSEPTXLQHQLEVYRRAPES 618
           QSE T ++ QLE +  AP S
Sbjct: 494 QSETTRIEKQLEQFESAPRS 513


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           KVW PDI+  N  D
Sbjct: 107 KVWKPDIVLFNNAD 120


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 132 DNVCSLLPHNAVQD 173
           DN+C  LP + VQD
Sbjct: 131 DNLCQFLPQDRVQD 144


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 476 AASGSRCTLPALQAGQPGPSSSMLTVXGSPS 568
           + SGSRC+ P++ +  P   +S+ +   S S
Sbjct: 773 SGSGSRCSKPSVTSTTPPTPASLSSSSSSSS 803


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,913
Number of Sequences: 2352
Number of extensions: 15338
Number of successful extensions: 285
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)