Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060219.seq
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...   181   5e-46
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U58764-2|AAB00724.3|  105|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score =  181 bits (440), Expect = 5e-46
 Identities = 94/189 (49%), Positives = 113/189 (59%)
 Frame = +1

Query: 37  LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 216
           L+D AN++RI SI  T ASKSGHPTS  S AEIMS LFF  M+Y ++ P+ ASADRF+LS
Sbjct: 11  LEDAANRMRISSIEMTCASKSGHPTSSTSAAEIMSTLFFSEMKYDVAEPKSASADRFVLS 70

Query: 217 KGHAAPILYAAWARPGCSRWTS*RTCASWTRTWRATPPRDSTSWTXAPAPWARGSPWPAG 396
           KGHA PILYAAW   G        +           P         A     +G     G
Sbjct: 71  KGHACPILYAAWEEAGLLSHEQVLSLRKIDSDIEGHPTPRLNFIDVATGSLGQGLGVATG 130

Query: 397 MAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASPTSWTTWSVIFDVNRLXQSEPTX 576
           MAYVGKY D+A YRV+CL+GDGE+AEGS+WE+  FAS         I DVNRL QS+ T 
Sbjct: 131 MAYVGKYIDKASYRVFCLLGDGESAEGSVWEAAAFASIYKLDNLVAIVDVNRLGQSQATS 190

Query: 577 LQHQLEVYR 603
           L H +E Y+
Sbjct: 191 LGHDVETYK 199


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 193 SADRFILSKGHAAPILYAAWARPGCSRWTS*RTCASWTRTWRATPPRDSTSWTXAPA--P 366
           +A+ F+  +  AA     + ++P    W S  T  S   +W A P   STSW  APA  P
Sbjct: 307 NANAFVQPQPVAAQSPPMSASQPLVDLWQSENTAPS--TSWGAAPAAPSTSWGAAPAAPP 364

Query: 367 WARGSPWPA 393
              G+P  A
Sbjct: 365 TWGGAPTAA 373


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 569  GSDCXRRLTSKMTDQVVQLVGLAKCSDSQMLPSAASPSPTRQYT 438
            G D  RR ++++TDQV+         DSQ   S A P P R  T
Sbjct: 2838 GGDRGRRRSTRITDQVID-EAFQGIFDSQPSTSTAHPKPVRTET 2880


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 569  GSDCXRRLTSKMTDQVVQLVGLAKCSDSQMLPSAASPSPTRQYT 438
            G D  RR ++++TDQV+         DSQ   S A P P R  T
Sbjct: 2838 GGDRGRRRSTRITDQVID-EAFQGIFDSQPSTSTAHPKPVRTET 2880


>U58764-2|AAB00724.3|  105|Caenorhabditis elegans Hypothetical
           protein M03E7.3 protein.
          Length = 105

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 537 DDGPGCPACRAGKVQRLP 484
           D+ P C +C+A KVQR P
Sbjct: 8   DENPLCESCKADKVQRKP 25


>AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical
           protein Y37A1B.15 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 45  YRQQTKNRQYCCYKRLKVWSPDIMCVNGGDNVCSL 149
           + ++T+    C +  LK+WS   + + GG+ +C+L
Sbjct: 14  FNKKTQYYSQCQFCTLKIWSNTEIVLAGGNVICNL 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,794
Number of Sequences: 27780
Number of extensions: 314050
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)