Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060219.seq
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           KVW PDI+  N  D
Sbjct: 107 KVWKPDIVLFNNAD 120


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 213 KNKSVGGSVSWRGDLVPHCVEE 148
           KN SVGG   W G L+   V E
Sbjct: 494 KNNSVGGKKEWTG-LIGELVNE 514


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 67  KLWKPDILMYNSAD 80


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 67  KLWKPDILMYNSAD 80


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 67  KLWKPDILMYNSAD 80


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 67  KLWKPDILMYNSAD 80


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 67  KLWKPDILMYNSAD 80


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 67  KLWKPDILMYNSAD 80


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 72  YCCYKRLKVWSPDIMCVNGGD 134
           Y   K   +W PDI   N GD
Sbjct: 116 YIYVKSDDIWVPDISVYNSGD 136


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 135 KLWKPDILMYNSAD 148


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  KVWSPDIMCVNGGD 134
           K+W PDI+  N  D
Sbjct: 135 KLWKPDILMYNSAD 148


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 237 PVRGVGEAG--LFPLDELKNLRKLDSDLEGHPT 329
           P+R  GE    +F  +E+KN+    + +E H T
Sbjct: 162 PIRRTGEGSKPIFEREEIKNVLTKINKIEEHDT 194


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 246 GVGEAGLFPLDELKNLRKLDSDLEGHPT 329
           G G   LF  +E+KN+    + +E H T
Sbjct: 167 GEGSKPLFEREEIKNVLTKINKIEEHDT 194


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 246 GVGEAGLFPLDELKNLRKLDSDLEGHPT 329
           G G   LF  +E+KN+    + +E H T
Sbjct: 156 GEGSKPLFEREEIKNVLTKINKIEEHDT 183


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 246 GVGEAGLFPLDELKNLRKLDSDLEGHPT 329
           G G   LF  +E+KN+    + +E H T
Sbjct: 167 GEGSKPLFEREEIKNVLTKINKIEEHDT 194


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 246 GVGEAGLFPLDELKNLRKLDSDLEGHPT 329
           G G   LF  +E+KN+    + +E H T
Sbjct: 156 GEGSKPLFEREEIKNVLTKINKIEEHDT 183


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 45  YRQQTKNRQYCCYKRLKV 98
           YRQ TKN     Y R K+
Sbjct: 49  YRQDTKNNLLNAYVRFKL 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,638
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 39
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)