Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060219.seq
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60750.1 68416.m06796 transketolase, putative strong similari...    49   2e-06
At2g45290.1 68415.m05637 transketolase, putative strong similari...    45   4e-05
At3g17680.1 68416.m02257 expressed protein similar to GB:AAD4975...    31   0.50 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    28   6.2  
At1g29280.1 68414.m03580 WRKY family transcription factor simila...    27   8.2  

>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +1

Query: 52  NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 231
           N +R  +I A   +KSGHP      A +  +L+   MRY    P   + DRF+LS GH  
Sbjct: 86  NSIRFLAIDAVEKAKSGHPGLPMGCAPMAHILYDEVMRYNPKNPYWFNRDRFVLSAGHGC 145

Query: 232 PILYA 246
            +LYA
Sbjct: 146 MLLYA 150



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 276 DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAVA 389
           ++LK  R+  S   GHP       ++V TG LGQG+A A
Sbjct: 163 EDLKQFRQWGSKTPGHPENFETPGIEVTTGPLGQGIANA 201


>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +1

Query: 52  NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 231
           N +R  +I A   +KSGHP      A +  +L+   M+Y    P   + DRF+LS GH  
Sbjct: 86  NTIRFLAIDAVEKAKSGHPGLPMGCAPMSHILYDEVMKYNPKNPYWFNRDRFVLSAGHGC 145

Query: 232 PILYA 246
            + YA
Sbjct: 146 MLQYA 150



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 276 DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAVA 389
           ++LK+ R+  S   GHP       V+  TG LGQG+A A
Sbjct: 163 EDLKSFRQWGSKTPGHPENFETPGVEATTGPLGQGIANA 201


>At3g17680.1 68416.m02257 expressed protein similar to GB:AAD49756
           from [Arabidopsis thaliana]
          Length = 313

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 195 RRQIYSFQGSRSADPVRGVGEAGLFPLDELKNLRKLDSDLE 317
           + +IYS Q SR+++PV      G F LD+ K  +K ++  E
Sbjct: 234 QNRIYSLQASRNSEPVSDKVSYGCFGLDKHKTKKKKENKTE 274


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 445 NTPCRAPGRSTSRRRPCRPATASPWPREPVPTS 347
           +TP  +P  +TS      PAT SP P+ P P S
Sbjct: 190 HTPALSPSHATSHS----PATPSPSPKSPSPVS 218


>At1g29280.1 68414.m03580 WRKY family transcription factor similar
           to DNA binding protein WRKY3 GB:U56834 GI:1432055 from
           [Petroselinum crispum]
          Length = 259

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 322 TPPRDSTSWTXAPAPWARGSPWPAG 396
           TPP DS +W        +GSP+P G
Sbjct: 71  TPPSDSWAWRKYGQKPIKGSPYPRG 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,304
Number of Sequences: 28952
Number of extensions: 297850
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)