Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060218.seq
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DC03AC Cluster: UPI0000DC03AC related cluster; n...    38   0.22 
UniRef50_Q7RJH7 Cluster: Putative uncharacterized protein PY0328...    34   3.6  
UniRef50_A0CHE9 Cluster: Chromosome undetermined scaffold_180, w...    34   3.6  
UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n...    33   6.2  
UniRef50_Q5DD36 Cluster: SJCHGC07499 protein; n=1; Schistosoma j...    33   8.2  

>UniRef50_UPI0000DC03AC Cluster: UPI0000DC03AC related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC03AC UniRef100 entry -
           Rattus norvegicus
          Length = 260

 Score = 37.9 bits (84), Expect = 0.22
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -1

Query: 643 HIHSSFHTXXXXILIIYTIHNTLHMCMPKVTY-----IIFHTST---SKRTL*SHKXTYH 488
           HIH+  H      + I+T H   H CMP ++Y     +  HT T   S R L +H  T H
Sbjct: 66  HIHTHTHVHTLTHICIHTSHTQSHTCMPVISYSHDTRVHTHTHTHTHSHRQLHTHSYT-H 124

Query: 487 SHCL 476
           SH L
Sbjct: 125 SHIL 128


>UniRef50_Q7RJH7 Cluster: Putative uncharacterized protein PY03283;
           n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY03283 - Plasmodium yoelii yoelii
          Length = 1236

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 522 KEHFNHISXHTTATVCIYNTE*ENALTFKIIME--RYSQAYIISYVIYEAISAFLCEYVI 349
           +EH N I+      + IY  + +N + +++++    Y + Y I  +I+E       + + 
Sbjct: 681 EEHINQITCIIKKRILIYIKKKKNHIIYRLLLNINEYGKLYFIFKLIFEN------KLIF 734

Query: 348 DTINYYLNLFKYLRSFVFINY*DTIVLNNC 259
           D + Y  N+F +L  + F N     + +NC
Sbjct: 735 DFLKYSKNVFSHLNVYNFNNDLSVSLNSNC 764


>UniRef50_A0CHE9 Cluster: Chromosome undetermined scaffold_180,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_180,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1138

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -2

Query: 399 SYVIYEAISAFLCEYVIDTINYYLNLFKYLRSFVFINY*DTIVLNNCN*HLARLTIRTYS 220
           +YVIY  ++   C  V+  I+ Y NL   L+   ++ Y +TI   N N     L+   ++
Sbjct: 728 NYVIYGLLALLGCGLVLGGIDIYFNLIDTLQYLSYLYYINTIFPYNVNQFFENLSFAQFT 787

Query: 219 LIR 211
           +++
Sbjct: 788 IVQ 790


>UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A1716 UniRef100 entry -
           Xenopus tropicalis
          Length = 158

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 447 LTFKIIMERYSQAYI-ISYVIYEAISAFLCEYVIDTINYYLNLFKYLRSFVFINY 286
           L FK     Y+  Y+ + ++ Y   + F+C Y +  ++YYL    Y+R  +   Y
Sbjct: 5   LLFKCAYYLYATIYMWLLFICYHLYALFICGYYLYALSYYLYATIYMRLLIICYY 59


>UniRef50_Q5DD36 Cluster: SJCHGC07499 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07499 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 212

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 28/112 (25%), Positives = 53/112 (47%)
 Frame = -2

Query: 492 TTATVCIYNTE*ENALTFKIIMERYSQAYIISYVIYEAISAFLCEYVIDTINYYLNLFKY 313
           TT T  I N    N L +  I+   +      ++ ++ +   L +Y I+T  Y   L K+
Sbjct: 105 TTTTTNIINNHDNNYLYWIKILNNLNDHLKSQFIYWKYLKQNLSKYHIETFIY---LLKF 161

Query: 312 LRSFVFINY*DTIVLNNCN*HLARLTIRTYSLIRLIFNMLTETYKLTMYALI 157
           L  F+ +N     ++ NC   L RL I+   +++++ + +T    LT+  +I
Sbjct: 162 LSLFINMNVLKEYIIMNCI-ILHRLCIQCDQILKML-SSVTSLELLTIERII 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,867,339
Number of Sequences: 1657284
Number of extensions: 11515677
Number of successful extensions: 20915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20899
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)