Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060218.seq
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   4.3  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   5.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.9  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 169 VCTYRFIY*MDFIICLTSKIDFTSSML 89
           +  Y++IY  D+ +CL  KI F   ML
Sbjct: 102 ILNYKWIYRKDYNLCLNQKIAFVLVML 128


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 5   RGCVASSRPSLLPADLEL----PTTALKRSLKQHTAGKINF*SQANYKVHLVNKSISAYI 172
           R CV SS+ +LLP   E+     +T L++++ QH   ++      N  + +V+  + +YI
Sbjct: 293 RICVVSSQDTLLPTIFEIDALFSSTPLRQNMPQHMFQRLKE-GYRNIIIAIVDYGVISYI 351


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 361 TQKCT-YRFIYHITNYVCLAISFHDNLES 444
           T+K T + FIY I  Y+C+A+    +L +
Sbjct: 8   TEKLTLFLFIYGICIYICIAVPIRSDLST 36


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 463  GIINTDSGCGMXTYVIKVFFWKLTYER*CMLL 558
            G ++ D       Y++ +  W LTYER   LL
Sbjct: 1138 GDVSQDEDSDAYNYLLSMPLWSLTYERYVELL 1169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,227
Number of Sequences: 5004
Number of extensions: 53885
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)