Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060218.seq
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li...    29   3.9  
AF022974-8|AAX22288.1|  289|Caenorhabditis elegans Serpentine re...    29   3.9  
Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
           protein F31D5.5 protein.
          Length = 1788

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 429 MERYSQAYIISYVIYEAISAFLCEYVIDTINYYLNLFKYL 310
           ++ ++Q YI+ +V  E   A  C Y I   NY  N+FK L
Sbjct: 64  LDNFNQKYIVFFVNLEC-GADNCAYQITINNYAWNVFKVL 102


>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
           protein MTH-1 protein.
          Length = 1757

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 429 MERYSQAYIISYVIYEAISAFLCEYVIDTINYYLNLFKYL 310
           ++ ++Q YI+ +V  E   A  C Y I   NY  N+FK L
Sbjct: 33  LDNFNQKYIVFFVNLEC-GADNCAYQITINNYAWNVFKVL 71


>AF022974-8|AAX22288.1|  289|Caenorhabditis elegans Serpentine
           receptor, class sx protein10 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 477 CIYNTE*ENALTFKIIMERYSQAYIISYVIYE--AISAFLCEYVIDTINYYLNLFKYLR 307
           C++ +  E AL F   M RY   + ISY I+   A    +   V+D + +    F Y+R
Sbjct: 57  CLFGSIFEGALNFMNPMNRYKCFWFISYFIFSQTAQDIIMLIIVLDILCFVQFPFLYMR 115


>Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical
           protein F28C12.1 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 450 ALTFKIIMERYSQAYIISYVIYEAISAFLCEYVIDTINYYLNLF 319
           +LTF  ++  Y   Y  S+  Y + S  + + ++    YY+ L+
Sbjct: 127 SLTFDRLVSHYKPKYYFSHQYYVSNSLLIIQLLLSLSTYYVGLY 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,017
Number of Sequences: 27780
Number of extensions: 301315
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)