Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060218.seq
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.37 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 456 ENALTFKIIMERYSQAYIISYVIYEAISAFLCEYV 352
           E  +TF II+ R +  Y ++ ++   + +FLC  V
Sbjct: 220 ETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLV 254


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 167 MHLSIYLL-NGLYNLPDFKN*FYQQYVVSSCVSMLWSVIPNQLAR 36
           M  ++Y+L NG ++LP F   FY    V+   S +++++   + R
Sbjct: 240 MPFAVYVLVNGSWSLPGFVCDFYIAMDVTCSTSSIFNLVAISIDR 284


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 549 TSSFIRQ--LPKEHFNHISXHTTATVCIYNTE*ENALTFKIIMERY 418
           T + IR+  +PKE     S +T   V I N +  +A+ +   + RY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAYVSDVFRY 333


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 605 INNLYNSQYLAHVHA*SNIHHLSYVNFQKNTLIT 504
           INN  N+  L HV A +  H      +  N +I+
Sbjct: 340 INNSQNALVLRHVQAEAEKHAAMLYQYNFNIIIS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,917
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)