Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060218.seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7) si...    29   2.1  
At2g15080.2 68415.m01719 disease resistance family protein conta...    27   8.5  
At2g15080.1 68415.m01718 disease resistance family protein conta...    27   8.5  

>At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7)
           similar to SP|O22446 Histone deacetylase (HD)
           {Arabidopsis thaliana}; contains Pfam profile PF00850:
           Histone deacetylase family
          Length = 409

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 641 HTFLLSYXLTXHINNLYNSQYLAHVHA*SNIHHLSYVNFQKNTLIT*VXIPQP 483
           H  +LSY L  H+    N   LA        H L Y+NF K+     V  P P
Sbjct: 40  HNLILSYNLHRHME--INHPDLADASDFEKFHSLEYINFLKSVTPETVTDPHP 90


>At2g15080.2 68415.m01719 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 983

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 466 YRIGKCSNFQDYHGKI*PGIHN*LCDI 386
           ++  KCS+F+D HG   P +   +CDI
Sbjct: 888 FQTQKCSSFEDNHGLYGPSLEK-ICDI 913


>At2g15080.1 68415.m01718 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 983

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 466 YRIGKCSNFQDYHGKI*PGIHN*LCDI 386
           ++  KCS+F+D HG   P +   +CDI
Sbjct: 888 FQTQKCSSFEDNHGLYGPSLEK-ICDI 913


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,963
Number of Sequences: 28952
Number of extensions: 253253
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)