Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060217.seq
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 317 NVPCGTSGGVLIYFERIEVVNNAGP 391
           +VPCGTSG  L +  ++ V     P
Sbjct: 225 SVPCGTSGNPLEWTGQVTVRKKRKP 249


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 197 CLLSGWSFITSYKSSWFSHVIP 262
           CL S  + +T+Y +S F +V P
Sbjct: 678 CLASNSASVTTYTTSLFINVPP 699


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 157 FIFPFIK*KKDMLVFIIGVELYYQLQVKLVFTCDTTSNXIXSHSXNFT 300
           FI+ F+   K +  F   + ++Y  +  + F  D  S     H+   T
Sbjct: 54  FIYAFVAPVKCLAFFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEIT 101


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 157 FIFPFIK*KKDMLVFIIGVELYYQLQVKLVFTCDTTSNXIXSHSXNFT 300
           FI+ F+   K +  F   + ++Y  +  + F  D  S     H+   T
Sbjct: 287 FIYAFVAPVKCLAFFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEIT 334


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 157 FIFPFIK*KKDMLVFIIGVELYYQLQVKLVFTCDTTSNXIXSHSXNFT 300
           FI+ F+   K +  F   + ++Y  +  + F  D  S     H+   T
Sbjct: 287 FIYAFVAPVKCLAFFCTALVIFYCQEGSVDFLFDNFSAAFQDHNIEIT 334


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,382
Number of Sequences: 336
Number of extensions: 2628
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)