Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060217.seq
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 75 3e-14
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 31 0.94
11_06_0595 - 25368114-25370051 30 1.2
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 30 1.2
08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505 30 1.2
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241... 30 1.6
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 29 2.2
07_03_0511 - 18911673-18911713,18922395-18923361,18926841-189276... 28 5.0
07_01_1124 + 10392909-10392974,10393037-10393455,10393503-103936... 27 8.7
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/114 (35%), Positives = 63/114 (55%)
Frame = +3
Query: 168 LHKVEEGHVGVYYRGGALLPVTSQAGFHM*YHF*HXTXPFXQLYKLMKLKMCLVAQVVGC 347
LH+V EGHVGVY+RGGALL + GFH+ P+ ++ ++++ G
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHV-------KLPWITQFEPIQVRNIPCGTKGGV 209
Query: 348 *FILKESR*SITLDPQSVLDMVRXFTAEYDRTLIFNKVHHELNQFCSAHTLHEV 509
+ L + V + + + YD+T I++K+HHE+NQFCSAH+L +V
Sbjct: 210 MISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQV 263
Score = 53.6 bits (123), Expect = 1e-07
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Frame = +2
Query: 290 TTLQTDEVKNVPCGTSGGVLIYFERIEVVNNAGPTKRTRYGAXLHS*I*QDSYFQ*SAP* 469
T + +V+N+PCGT GGV+I F++IEVVN K + L+ + D +
Sbjct: 191 TQFEPIQVRNIPCGTKGGVMISFDKIEVVNRLH--KEFVHETLLNYGVHYDKTWIYDKIH 248
Query: 470 TESIL*CPY--LARGYIDLXDQIXENLRTALXKDLHEMAPXLRVQAV 604
E C L + YIDL DQI E ++ A+ +D AP + + +V
Sbjct: 249 HEINQFCSAHSLQQVYIDLFDQIDETMKEAIQRDCTRYAPGIEIISV 295
>04_01_0129 +
1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 30.7 bits (66), Expect = 0.94
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 518 NQCNLVQGMGTTELIQFMVHFIENKSPV 435
++ ++ +G GT E+I+F V FIE+ P+
Sbjct: 671 SEASIAKGYGTEEVIEFCVEFIEDLRPI 698
>11_06_0595 - 25368114-25370051
Length = 645
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 515 QCNLVQGMGTTELIQFMVHFIENKSPV 435
+ ++ +G GT E+I+F V FIE+ P+
Sbjct: 324 EASIAKGYGTEEVIEFCVEFIEDLRPI 350
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 515 QCNLVQGMGTTELIQFMVHFIENKSPV 435
+ ++ +G GT E+I+F V FIE+ P+
Sbjct: 611 EASIAKGYGTEEVIEFCVEFIEDLRPI 637
>08_02_0838 - 21662721-21662759,21672016-21673355,21673566-21674505
Length = 772
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 515 QCNLVQGMGTTELIQFMVHFIENKSPV 435
+ ++ +G GT E+I+F V FIE+ P+
Sbjct: 710 EASIAKGYGTEEVIEFCVEFIEDLRPI 736
>07_03_0375 +
17408815-17409035,17422820-17423477,17423780-17424161,
17424236-17424550,17424727-17425118,17432479-17432508
Length = 665
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 515 QCNLVQGMGTTELIQFMVHFIENKSPV 435
+ ++ +G GT E+I+F + FIE+ P+
Sbjct: 629 EASIAKGCGTEEVIEFCIEFIEDLRPI 655
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 399 VLDMVRXFTAEYDRTLIFNKVHHELNQFCSAHTLHEVTL 515
VLD++R E + + +K+ E N + + T+H V L
Sbjct: 496 VLDLIRLLAIEENFVKVLDKMREEHNSYAQSTTVHRVAL 534
>07_03_0511 -
18911673-18911713,18922395-18923361,18926841-18927659,
18928152-18928757
Length = 810
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 515 QCNLVQGMGTTELIQFMVHFIENKSPV 435
+ ++ +G G E+I+F V FIE+ P+
Sbjct: 492 EASIAKGYGAEEVIEFCVEFIEDLRPI 518
>07_01_1124 +
10392909-10392974,10393037-10393455,10393503-10393657,
10393792-10394247,10394379-10395298
Length = 671
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 515 QCNLVQGMGTTELIQFMVHFIEN 447
+ ++ +G GT E+I+F V FIE+
Sbjct: 566 EASIAKGYGTEEVIEFCVEFIED 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,333
Number of Sequences: 37544
Number of extensions: 254521
Number of successful extensions: 459
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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