Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060217.seq
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...    97   1e-20

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 56/132 (42%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
 Frame = +3

Query: 123 LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHM*YHF*HXTXPFXQLY 299
           LA+ + A+ + +   +LHK+EEGHVGVYYRGGALL   +  G+HM  H    T       
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHM--HIPFLTTVKSVQV 62

Query: 300 KLMKLKMCLVAQVVGC*FILKESR*SIT--LDPQSVLDMVRXFTAEYDRTLIFNKVHHEL 473
            L   +   V        ++   R  +   L   SV  +V+ +T +YDR LIFNKVHHE+
Sbjct: 63  TLQTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEV 122

Query: 474 NQFCSAHTLHEV 509
           NQFCS HTL EV
Sbjct: 123 NQFCSVHTLQEV 134



 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 54/118 (45%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
 Frame = +2

Query: 257 IPLLTXYXAIXTTLQTDEVKNVPCGTSGGVLIYFERIEVVNNAGPTKRTRYGAXLHS*I* 436
           IP LT   ++  TLQTDE  NVPCGTSGGVLIYF+RIEVVN    ++ + Y    +  + 
Sbjct: 51  IPFLTTVKSVQVTLQTDEATNVPCGTSGGVLIYFDRIEVVNFL--SQDSVYAIVKNYTVD 108

Query: 437 QDSYFQ*SAP*TESIL*CPY--LARGYIDLXDQIXENLRTALXKDLHEMAPXLRVQAV 604
            D     +    E    C    L   YIDL D+I E ++ AL +DL +MAP L VQAV
Sbjct: 109 YDRPLIFNKVHHEVNQFCSVHTLQEVYIDLFDKIDEEIKNALQEDLVKMAPGLYVQAV 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,333,475
Number of Sequences: 27780
Number of extensions: 236183
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)