Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060217.seq
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -2

Query: 409 ISSTLCGSSVIDYLDSFKINQHPTTCATRHIFNFISL*SCXNGXV 275
           I  TL    V+D+   F IN    TC  + +   +      NG +
Sbjct: 96  IDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGII 140


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 382 VIDYLDSFKINQHP 341
           +IDY  S+K++Q P
Sbjct: 425 IIDYYHSYKMHQKP 438


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 382 VIDYLDSFKINQHP 341
           +IDY  S+K++Q P
Sbjct: 425 IIDYYHSYKMHQKP 438


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -1

Query: 218 SSTPIINTNMSFFYFMKGKMNRDPYSQNHNGQNRRL 111
           S+  I N N   + +     N + Y+ N+N   ++L
Sbjct: 319 SNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKL 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,714
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)