Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060216.seq
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.9  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   9.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   9.1  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 345 EELXGRNPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKH 467
           E L GR P   +     G LP   P T + I   A++ +KH
Sbjct: 344 EILYGRTPPNPLDAVTSGLLPVRPPLTREEIHEKARENLKH 384


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 598 CTPRSSRPLGRTSVGGPHL 654
           C+P S     RTS  G HL
Sbjct: 150 CSPGSGHQDSRTSPSGQHL 168


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 598 CTPRSSRPLGRTSVGGPHL 654
           C+P S     RTS  G HL
Sbjct: 150 CSPGSGHQDSRTSPSGQHL 168


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 598 CTPRSSRPLGRTSVGGPHL 654
           C+P S     RTS  G HL
Sbjct: 150 CSPGSGHQDSRTSPSGQHL 168


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 359 PESAPARLAVQGGPPALAPALHRRRDQVVREARCQAPDPGAS 484
           P S+PA  A    P ++A        Q+V      AP   A+
Sbjct: 154 PRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSAN 195


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 359 PESAPARLAVQGGPPALAPALHRRRDQVVREARCQAPDPGAS 484
           P S+PA  A    P ++A        Q+V      AP   A+
Sbjct: 145 PRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSAN 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,705
Number of Sequences: 336
Number of extensions: 2435
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)