Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060216.seq
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672...    65   6e-11
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    62   4e-10
03_05_1142 - 30703333-30703469,30704058-30704205,30704893-307049...    31   0.83 
02_02_0392 - 9649858-9650405,9650499-9650670,9650788-9650926,965...    29   4.4  
09_02_0453 - 9502060-9502773,9502795-9503367                           28   7.7  
04_01_0151 - 1751828-1751911,1754565-1755578                           28   7.7  

>05_04_0005 +
           17063717-17063866,17065737-17065855,17066903-17067218,
           17067579-17067722,17067909-17067926,17068853-17068954,
           17069358-17069461,17069543-17069669,17069809-17069961,
           17070261-17070361,17070538-17070739,17071245-17071469
          Length = 586

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +3

Query: 300 DTYPHEVAGTVSRTMEELXGR---NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHL 470
           D Y  E+   V   MEEL  R   N   L +QS+VGP+ WL+PYTD+ I    ++GVK L
Sbjct: 380 DPYKAEMEECVDLIMEELEKRGITNSCTLAYQSRVGPVEWLRPYTDETIIELGQKGVKSL 439

Query: 471 ILXPVAFVNXHIE 509
           +  P++FV+ HIE
Sbjct: 440 LAVPISFVSEHIE 452


>09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,
            7138413-7138538,7138650-7139619,7139641-7139737,
            7140026-7140113,7140336-7140396,7140425-7140447,
            7140663-7140776,7141193-7141306,7144731-7144825,
            7146506-7146824,7147166-7147309,7147463-7147564,
            7147868-7147971,7148121-7148247,7148804-7148845,
            7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
 Frame = +3

Query: 300  DTYPHEVAGTVSRTMEELXGR---NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHL 470
            D Y  ++   ++  M EL  R   N H L +QS+VGP+ WL+PYTD+ +    +QGVK L
Sbjct: 935  DPYRDQMEDCIALIMGELKSRGILNSHTLAYQSRVGPVQWLKPYTDEVLVELGQQGVKSL 994

Query: 471  ILXPVAFVNXHIEPCTSWTXSIATR*PXXP 560
            +  PV F++  I+    W    A   P  P
Sbjct: 995  LAVPVRFISLTIQ---EWLVQFAFFFPTSP 1021


>03_05_1142 -
           30703333-30703469,30704058-30704205,30704893-30704963,
           30705189-30705285,30705371-30705562,30705639-30705977
          Length = 327

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 345 EELXGRNPHRLVWQSKVGPLPW--LQPYTDDAIKLYAKQGV 461
           +EL G    +L  Q    PLPW     YT DA++LY + GV
Sbjct: 196 QELTGVKKPKLDEQESSPPLPWDDKHAYTRDAVELYYQAGV 236


>02_02_0392 -
           9649858-9650405,9650499-9650670,9650788-9650926,
           9651113-9651334,9651422-9651495,9653042-9653661,
           9653810-9653965,9655250-9655347,9655443-9655534,
           9655891-9655977
          Length = 735

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 408 WLQPYTDDAIKLYAKQGVKHLI 473
           W +PY  D I L AK+G K +I
Sbjct: 388 WPEPYNKDTIDLLAKEGAKGII 409


>09_02_0453 - 9502060-9502773,9502795-9503367
          Length = 428

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 316 RWPAPCXGPW-RSSVAGIRTG 375
           RWP PC  PW R  +AG  TG
Sbjct: 212 RWPWPCDRPWSRWRLAGRATG 232


>04_01_0151 - 1751828-1751911,1754565-1755578
          Length = 365

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 407 LAPALHRRRDQVVREARCQAPDPGASGLRQXTH*TLHELDIXYC 538
           LAP   +  D +V +   +  D G  G+R   H  L  L + +C
Sbjct: 105 LAPLQQKAVDALVADIAARGADGGEVGVRDVVHDALFPLAVRFC 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,202
Number of Sequences: 37544
Number of extensions: 325886
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)