Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060216.seq
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_21410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_55076| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_46378| Best HMM Match : DUF1045 (HMM E-Value=3.4)                   28   7.9  

>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/70 (61%), Positives = 50/70 (71%)
 Frame = +3

Query: 300 DTYPHEVAGTVSRTMEELXGRNPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHLILX 479
           D YP EVA TV R ME L   + +RLVWQSKVGPLPWL P T+DAIK  AK   K+L+L 
Sbjct: 448 DPYPQEVAATVQRVMEALDFSHSYRLVWQSKVGPLPWLGPQTEDAIKGLAKNNKKNLLLV 507

Query: 480 PVAFVNXHIE 509
           P+AF + HIE
Sbjct: 508 PIAFTSDHIE 517



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 509 TLHELDIXYCDEVAXXAGILQIERADAXNRAP 604
           TLHELDI Y  E+A   G+  I RA++ N  P
Sbjct: 518 TLHELDIEYAQELAHEVGVENIRRAESLNDNP 549


>SB_21410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 315 EVAGTVSRTMEELXGRNPHRLVWQSKVGPLPWLQPYTDDAI 437
           EVAGT    + EL G   H   W+ + G  P +Q   DD I
Sbjct: 170 EVAGTADEDVRELVGDLLHSKRWRGEFGAPPTVQHKYDDKI 210


>SB_55076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 5   RGRYTFYSIPGSHFVTCTRVREEDKKWKASAIPGLLPGTTPANVKFSLIERWASHKLL 178
           RGR + +S P S  V C + +++ +K +  A     PG    N  + L  R+ S +LL
Sbjct: 86  RGRASQHSFPQSQTVVCVKTKKKKEK-RPLAWDRTRPGKQNGNHTYGLPNRYGSTRLL 142


>SB_46378| Best HMM Match : DUF1045 (HMM E-Value=3.4)
          Length = 297

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 362 ESAPARLAVQGGPPALAPALHRRRDQVVREARCQAPDPGASGL 490
           +SAPA++  +G  PAL+P  H        ++   A   G S L
Sbjct: 193 DSAPAKVHAEGAAPALSPRTHAANSMSGEKSDHTALKAGLSAL 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,076,444
Number of Sequences: 59808
Number of extensions: 346158
Number of successful extensions: 4041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4041
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)