Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060216.seq
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 550 GYLVAILNVQLVQGSMCXLTKATGXRIRCLTPCFAYNLIASSV 422
           G    ++ V +V  ++      T  R+R +T CF  +L A+ +
Sbjct: 42  GLFTMLIIVTIVGNTLVIAAVITTRRLRSVTNCFVSSLAAADL 84


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 VLDTVPATS*GYVSASQXRPSKADYAPXRYQYV 242
           V D   A++ GY    Q R  +  +AP RY+ V
Sbjct: 94  VKDNKLASNAGYNVIEQVRTKEEPHAPYRYEAV 126


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 VLDTVPATS*GYVSASQXRPSKADYAPXRYQYV 242
           V D   A++ GY    Q R  +  +AP RY+ V
Sbjct: 94  VKDNKLASNAGYNVIEQVRTKEEPHAPYRYEAV 126


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 340 VLDTVPATS*GYVSASQXRPSKADYAPXRYQYV 242
           V D   A++ GY    Q R  +  +AP RY+ V
Sbjct: 94  VKDNKLASNAGYNVIEQVRTKEEPHAPYRYEAV 126


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 337 GPWRSSVAGIRTGSSG 384
           GP  SS  G+ TG+SG
Sbjct: 21  GPGSSSAGGVVTGASG 36


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 29   IPGSHFVTCTRVR 67
            +PGS++ TC R++
Sbjct: 1656 VPGSNYNTCDRIK 1668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,954
Number of Sequences: 438
Number of extensions: 2675
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)