Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060216.seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26030.1 68418.m03097 ferrochelatase I identical to Swiss-Pro...    71   7e-13
At2g30390.1 68415.m03698 ferrochelatase II identical to Swiss-Pr...    69   4e-12
At2g25800.1 68415.m03096 expressed protein                             29   2.8  

>At5g26030.1 68418.m03097 ferrochelatase I identical to
           Swiss-Prot:P42043 ferrochelatase I,
           chloroplast/mitochondrial precursor (EC 4.99.1.1)
           (Protoheme ferro-lyase) (Heme synthetase) [Arabidopsis
           thaliana]
          Length = 466

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
 Frame = +3

Query: 300 DTYPHEVAGTVSRTMEELXGR---NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHL 470
           D Y  ++   +   MEEL  R   N H+L +QS+VGP+ WL+PYTD+ +    K GVK L
Sbjct: 296 DPYQKQMEECIDLIMEELKARGVLNDHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSL 355

Query: 471 ILXPVAFVNXHIE 509
           +  PV+FV+ HIE
Sbjct: 356 LAVPVSFVSEHIE 368


>At2g30390.1 68415.m03698 ferrochelatase II identical to
           Swiss-Prot:O04921 ferrochelatase II, chloroplast
           precursor (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme
           synthetase) [Arabidopsis thaliana]
          Length = 512

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
 Frame = +3

Query: 300 DTYPHEVAGTVSRTMEELXGR---NPHRLVWQSKVGPLPWLQPYTDDAIKLYAKQGVKHL 470
           D Y  E+   V   MEEL  R   N + L +QS+VGP+ WL+PYT++AI    K+GV++L
Sbjct: 307 DPYKAEMEECVDLIMEELDKRKITNAYTLAYQSRVGPVEWLKPYTEEAITELGKKGVENL 366

Query: 471 ILXPVAFVNXHIE 509
           +  P++FV+ HIE
Sbjct: 367 LAVPISFVSEHIE 379


>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  LLLHPRQPLCYLHQSPRRRQEVEGECD 99
           LLLHPR PL   + S R RQ + G  D
Sbjct: 218 LLLHPRVPLDKTNSSQRLRQIIHGALD 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,864,104
Number of Sequences: 28952
Number of extensions: 223792
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)