Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060215.seq
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8Y5P5 Cluster: Lmo2011 protein; n=14; Listeria|Rep: Lm...    33   7.9  
UniRef50_Q8A1R3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_Q88Z83 Cluster: Integral membrane protein; n=1; Lactoba...    33   7.9  
UniRef50_A1ZI87 Cluster: Membrane protein, putative; n=1; Micros...    33   7.9  

>UniRef50_Q8Y5P5 Cluster: Lmo2011 protein; n=14; Listeria|Rep:
           Lmo2011 protein - Listeria monocytogenes
          Length = 579

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 373 KRTTDERDGKRNNNNRYRVPGISKPLLRSTL-SIGLL 480
           ++T DE  G +NN   YRV   S PL+  TL  IGLL
Sbjct: 260 QKTEDETSGLKNNTFLYRVTDDSAPLIELTLFGIGLL 296


>UniRef50_Q8A1R3 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 749

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 123 NMSEHV*FYQISGLSEIACYMTNFGRVGSHYKTRSQIPS 7
           N+ EH+ + Q  G   I  Y  +F +   HY+ R + P+
Sbjct: 272 NIDEHIAYAQKGGFKSIVVYYVDFAKACGHYEWRKEYPN 310


>UniRef50_Q88Z83 Cluster: Integral membrane protein; n=1;
           Lactobacillus plantarum|Rep: Integral membrane protein -
           Lactobacillus plantarum
          Length = 340

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
 Frame = -1

Query: 620 LFVLPGVMVVLLVEFTLPFTV-----LSQTRANSTILAIY------SYPLACLHLSVYR- 477
           L ++ GV+V++LV   +   V     L Q    + +L  Y      +Y LAC+   + R 
Sbjct: 100 LAIVGGVLVIMLVLSVINLGVWHSRRLWQLLGLALLLTAYFAFSFIAYLLACVMTRLGRH 159

Query: 476 RPIDN-VDLNNGLEIPGTRYRLLLFRFPSRSSVVRFQRARRHAPLDL 339
           R ID  + L  GL   G   R L +R  + +   R QRAR H P+ +
Sbjct: 160 RQIDYMIVLGAGLMPNGQPTRTLAYRLQAAAKYYRVQRARYHQPITI 206


>UniRef50_A1ZI87 Cluster: Membrane protein, putative; n=1;
           Microscilla marina ATCC 23134|Rep: Membrane protein,
           putative - Microscilla marina ATCC 23134
          Length = 523

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 623 ALFVLPGVMVVLLVEFTLPFTVLSQTRANSTILAIYSYPLACLH----LSVYRRPIDNVD 456
           A+ ++  ++ ++L  F+  F   SQT  N TIL ++   L+ L     L++Y   I    
Sbjct: 257 AITLMSSILYIILSVFSQLFNRRSQTSTNKTILTVFLISLSSLFVLSLLNLYLNRISKGQ 316

Query: 455 LNNGLEI 435
           +NN  EI
Sbjct: 317 INNIFEI 323


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,312,177
Number of Sequences: 1657284
Number of extensions: 12358042
Number of successful extensions: 29181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29174
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)