Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060215.seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    28   1.4  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    27   3.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   4.1  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   4.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   5.5  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 121 YERACLVLSNLRALGNCLLYDELW---SRWQSLQNTVSDSVS 5
           ++R C +    R L  C LYDE W   +RW S Q    + VS
Sbjct: 298 FQRICHLYE--RCLITCALYDEFWFRYARWMSAQPDHLNDVS 337


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 434 PGTRYRLLLFRFPSRSSVVRFQRARRHAPLDL 339
           PG R  LLL +FP R     +  A   AP+D+
Sbjct: 35  PGLRNNLLLNQFPLRPKNRTYSDANGEAPIDV 66


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 595 LFCSLSLHYHLQFFH 551
           +FC L +HY+ +FFH
Sbjct: 349 IFCKLFIHYNERFFH 363


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 592 FCSLSLHYHLQFFHKHEQTARFSRF 518
           F SL +  HLQ+FH+ +   R   F
Sbjct: 161 FVSLDIEQHLQYFHEWQNKPRVEYF 185


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 373 KRTTDERDGKRNNNNRYRVPGISKPLLRSTLSIGLLYTD 489
           KR  +   G+RN N RY    I K L ++T ++   + D
Sbjct: 128 KRALEWLQGERNENRRYAAVLILKELAKNTSTLIYAHID 166


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 583 LSLHYHLQFFHKHEQTARFSRFIP 512
           LSLH+H  ++H   +   F  F P
Sbjct: 246 LSLHFHQDYYHNLHRVGAFEPFDP 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,833
Number of Sequences: 5004
Number of extensions: 53792
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)