Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060215.seq
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310...    29   2.4  
07_01_0135 - 989616-989702,990746-991013,991229-991566                 28   5.6  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    28   7.5  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           28   7.5  
04_04_1369 - 32982354-32983024,32983386-32983959                       27   9.9  
01_01_0155 - 1362710-1363267                                           27   9.9  

>06_01_0437 +
           3101449-3101521,3101872-3102232,3103766-3103958,
           3104051-3104848,3104997-3105143,3106024-3106377
          Length = 641

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 377 RFQRARRHAPLDLPRFFISAMTCYAKQNWNSSQRLGREFT 258
           R +RAR     + PR    A T  A + W S++R GR+ T
Sbjct: 101 RLRRARLRRRQEAPRRAGGASTAAAVRRWGSARRAGRQST 140


>07_01_0135 - 989616-989702,990746-991013,991229-991566
          Length = 230

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 406 NNNNRYRVPGISKPLLRSTLS 468
           NNNN  ++PG+S+ LL+  LS
Sbjct: 138 NNNNSGKLPGLSRKLLQKALS 158


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 536  STILAIYSYPLACLHLSVYRRPIDNVDLNNGLEI 435
            ST   +YS+ +  L + + RRP D++  N+GL I
Sbjct: 2094 STATDVYSFGVVLLEIFIRRRPTDDM-FNDGLSI 2126


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 536 STILAIYSYPLACLHLSVYRRPIDNVDLNNGLEI 435
           ST+  +YS+ +  L + + +RP DN+   +GL+I
Sbjct: 901 STVADVYSFGIILLEIFLRKRPTDNM-FKDGLDI 933


>04_04_1369 - 32982354-32983024,32983386-32983959
          Length = 414

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 595 LFCSLSLHYHLQFFHKHEQTAR--FSRFIPTPLPAYICLCTEDRLIMLISI 449
           L C LSL  +++  HK E+ AR  +S  IP     ++ L   D   +L+ +
Sbjct: 76  LNCELSLQDYIRAIHKLEKQARCYYSEEIPMEKMMFVRLLLLDSCFILVKV 126


>01_01_0155 - 1362710-1363267
          Length = 185

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 6   ETESETVFCNDCQRDQSSSYNKQFPRALRFD 98
           E ES    C DCQ+ +SSS + + PR +  D
Sbjct: 139 EVESCAAACKDCQQLESSSSSSEPPRYVCHD 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,241
Number of Sequences: 37544
Number of extensions: 334566
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)