Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060215.seq
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52320| Best HMM Match : DEAD (HMM E-Value=0)                        29   3.3  
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)         29   4.4  
SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)                      28   5.8  
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 340

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 212 TMVSDGPQLHHIKLNSRLQI*MYLLCKLTSI*ASMFSFIKSQGSRKLLV 66
           T++    Q   +K  +RL +  Y++C+L      +FSFI++    K+LV
Sbjct: 230 TLLYSATQTRSVKDLARLSLQSYVVCELPDKLNFLFSFIRNHLKSKILV 278


>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 291 PILFGVTSHGAYE-KSWEIERCVTTCSLKTNYR 386
           PI+FGV S   +   SW IE+CV+  +LK N R
Sbjct: 33  PIVFGVVSRPLFACYSWVIEKCVS--ALKLNLR 63


>SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)
          Length = 414

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 57  SSYNKQFPRALRFDKTKHARSY*CQLA*QIHLNLKARVELYMMQLWSI 200
           ++YN+ F     +   K A ++ CQL   ++LNLK +V     + W +
Sbjct: 352 TAYNEYFQWRKYYIAKKDALTFPCQLCTALNLNLKPKVYNNFEKYWGV 399


>SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 645

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 124 QYERACLVLSNLRALGNCLLYDELWSRWQSLQNTVSDSV 8
           QY R CL+  N+R L  CL  +EL    +  QN + D++
Sbjct: 219 QYVRLCLL--NIRFLSQCLDTNELVKADRQCQNIIKDAL 255


>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 491 LSVYRRPIDNVDLNNGLEIPGTRYRLLLFRFPSRSSVVRFQRARRHAP 348
           L  YR   DN +L   LEIP   +R  L +    +  +   + R H P
Sbjct: 796 LRTYRDHKDNYELGCYLEIPNQNHRRCLTKLRMSNHDLEIDKGRYHRP 843


>SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 233 SWT*TKP*Q*IRGLNAENCSNFVWRNKSW 319
           +W   +P     G N ENC    WR K W
Sbjct: 205 AWDKQEPNNFNSGCNKENCVELKWRTKRW 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,510,948
Number of Sequences: 59808
Number of extensions: 412858
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)