Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060215.seq
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY005148-1|AAF89090.1|  441|Drosophila melanogaster nicotinic ac...    29   5.5  
AJ318761-1|CAC48166.1|  441|Drosophila melanogaster nicotinic ac...    29   5.5  
AE014134-120|AAF51485.1|  441|Drosophila melanogaster CG11822-PA...    29   5.5  
AY084207-1|AAL89945.1| 1282|Drosophila melanogaster SD03956p pro...    29   7.3  
AY069771-1|AAL39916.1| 2119|Drosophila melanogaster SD01389p pro...    29   7.3  
AE014297-4250|AAF56803.1| 2119|Drosophila melanogaster CG10011-P...    29   7.3  

>AY005148-1|AAF89090.1|  441|Drosophila melanogaster nicotinic
           acetylcholine receptorbeta subunit protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 614 VLPGVMVVLLVEFTLPFTVLSQTRANSTILAIYSYPLACLHLSV 483
           ++ G++++++  F + F  L    +N+T L +  Y  + L+LSV
Sbjct: 282 MINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSV 325


>AJ318761-1|CAC48166.1|  441|Drosophila melanogaster nicotinic
           acetylcholine receptorbeta 3 (Dbeta3) subunit protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 614 VLPGVMVVLLVEFTLPFTVLSQTRANSTILAIYSYPLACLHLSV 483
           ++ G++++++  F + F  L    +N+T L +  Y  + L+LSV
Sbjct: 282 MINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSV 325


>AE014134-120|AAF51485.1|  441|Drosophila melanogaster CG11822-PA,
           isoform A protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 614 VLPGVMVVLLVEFTLPFTVLSQTRANSTILAIYSYPLACLHLSV 483
           ++ G++++++  F + F  L    +N+T L +  Y  + L+LSV
Sbjct: 282 MINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSV 325


>AY084207-1|AAL89945.1| 1282|Drosophila melanogaster SD03956p
           protein.
          Length = 1282

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 290 NSSQRLGREFTVMASSMSTSHID*LGTMVSDGPQLHHIKLNSRLQI*MYLLC 135
           NS  R GR   + AS M   H D +  ++ +G  ++H+ L+ R  + +  LC
Sbjct: 540 NSVDRQGRTSLIAASYMG--HYDIVEILLENGANVNHLDLDGRSALCVAALC 589


>AY069771-1|AAL39916.1| 2119|Drosophila melanogaster SD01389p protein.
          Length = 2119

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 290  NSSQRLGREFTVMASSMSTSHID*LGTMVSDGPQLHHIKLNSRLQI*MYLLC 135
            NS  R GR   + AS M   H D +  ++ +G  ++H+ L+ R  + +  LC
Sbjct: 1377 NSVDRQGRTSLIAASYMG--HYDIVEILLENGANVNHLDLDGRSALCVAALC 1426


>AE014297-4250|AAF56803.1| 2119|Drosophila melanogaster CG10011-PA
            protein.
          Length = 2119

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 290  NSSQRLGREFTVMASSMSTSHID*LGTMVSDGPQLHHIKLNSRLQI*MYLLC 135
            NS  R GR   + AS M   H D +  ++ +G  ++H+ L+ R  + +  LC
Sbjct: 1377 NSVDRQGRTSLIAASYMG--HYDIVEILLENGANVNHLDLDGRSALCVAALC 1426


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,152,090
Number of Sequences: 53049
Number of extensions: 597710
Number of successful extensions: 1484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)