Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060215.seq
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 356 DDVLSENELQTNATGNETIITDIVFPESPN 445
           DD   E E+QT   G+ET++ D+   E+P+
Sbjct: 391 DDDDEEEEVQTMTLGSETVLNDVPMEEAPD 420


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 575 TLPFTVLSQTRANSTILAIYSYPLACLHLSVYRRPIDNV 459
           T+P+   S   + ST + I+SY   C+H SV +   D++
Sbjct: 618 TIPYGKTSGPSSTSTQVGIFSYHTYCVHCSVDQEVSDDL 656


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
           protein T23F2.2b protein.
          Length = 1538

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +2

Query: 287 CSN--FVWRNKSWRL*KIVGDRAVRDDVLSE---NELQTNATGNETIITDIVFPES---P 442
           C N  F+WRNK+ +L  +  D+ V+   L E     ++     + T+  + VF E     
Sbjct: 398 CQNEAFIWRNKAAQLEIVAKDQLVKIQQLEEYLQKVMEPVPESHITVTENAVFVEDVSHT 457

Query: 443 NRY*DQHYQSVFCTQTN 493
           NR  D H   +  T  N
Sbjct: 458 NREADPHNDPIVITDCN 474


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
           protein T23F2.2a protein.
          Length = 1534

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +2

Query: 287 CSN--FVWRNKSWRL*KIVGDRAVRDDVLSE---NELQTNATGNETIITDIVFPES---P 442
           C N  F+WRNK+ +L  +  D+ V+   L E     ++     + T+  + VF E     
Sbjct: 398 CQNEAFIWRNKAAQLEIVAKDQLVKIQQLEEYLQKVMEPVPESHITVTENAVFVEDVSHT 457

Query: 443 NRY*DQHYQSVFCTQTN 493
           NR  D H   +  T  N
Sbjct: 458 NREADPHNDPIVITDCN 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,932
Number of Sequences: 27780
Number of extensions: 307704
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)