Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060214.seq
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 29 0.81
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 27 3.3
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 27 3.3
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 27 3.3
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 4.3
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 26 5.7
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 5.7
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 26 5.7
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 26 5.7
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.6
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.6
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 10.0
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 25 10.0
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 10.0
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 25 10.0
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 10.0
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 101 EPHNSTLNENTNYFWTDSRPEGFVFEIEA 187
EPH+S L++N N+ +D E F +IEA
Sbjct: 122 EPHHSELHDNDNFQNSDINIESFKGDIEA 150
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 283 DQKIYEDGSIEKK-VKINTLCKVEWYENDGAIKLMPVTGVAILKKGR 420
D IY G ++ VK+N +V WY+ G + +PV +I K+ R
Sbjct: 226 DLSIYFGGDVDTSTVKVN---RVNWYDPCGKLAKVPVDEESIPKEER 269
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 349 EWYENDGAIKLMPVTGVAILK 411
+W+ NDGA + TG A+ K
Sbjct: 750 DWWGNDGAFNTLDATGAAVRK 770
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 650 AIVEARNDTRIDICANNWKFVFFEPYDAILTRNVFNISAIYGNSS*RHWMPGFS 489
A+ + +N T + CA + + F AILT +F +++++G H P FS
Sbjct: 37 AVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLF-VTSLFGGIFYLH--PAFS 87
>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 301 LRRSSGQTRLDFSVAPYFQNALRLMIGIVNREFITNRNRLNLKYESFWS*VGPEVI 134
L ++ G T +D Y + + N I N N LNL S W GP+VI
Sbjct: 195 LAKAFGSTDID----AYVVTIVPKIFSCSNTTEIKNLNNLNLTTNSHWYPCGPDVI 246
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 635 RNDTRIDICANNWKFVFFEPYDAIL 561
R+D+ ID+ +N K +FF+P + L
Sbjct: 695 RSDSHIDLLFSNMKHLFFQPCEGEL 719
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 280 FDQKIYEDGSIEKKVKINTLCKVEWYE 360
F++ + E G ++K KI LC W E
Sbjct: 311 FEKYLSEQGITKEKQKIGVLCSKRWNE 337
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +1
Query: 262 QKNQVEFDQKIYEDGSIEKKVKINTLCKVEWY 357
+ V+ + ++D +IEKK + + K++WY
Sbjct: 12 KSTSVDISEGTFDDITIEKKEEAKLVRKLDWY 43
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 128 NTNYFWTDSRPEGFVFEIEAVSVGDKFT 211
+TN +++ S+PE V E+++ G+ T
Sbjct: 114 STNQYFSSSKPEACVIARESINAGEDIT 141
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 511 DTGCRALVRNPFGVV*SQ*PHSQHGRQLHHHDPS 410
+ G ++ PFGV +HG QL+H +PS
Sbjct: 127 EDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPS 160
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 530 KWR*Y*RHSLSVLRRRARKIRTSS 601
KW RH ++LR +AR+IR SS
Sbjct: 171 KWTNATRHRQALLRTQARRIRISS 194
>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 84 LADLHLSPTTRRSMKTPITSGPTQDQKDSYLR 179
+A LS R +K PI S T +K Y+R
Sbjct: 59 MAICRLSSQKSRKLKNPIESSTTSHKKKGYVR 90
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 191 SVGD-KFTIYDANHEPQGILEVGSNRKIK 274
S+GD +++I+ A H P G + + SN+ K
Sbjct: 121 SLGDSQWSIFIAKHRPYGFMVLDSNQNTK 149
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 451 HSQHGRQLHHHDPSSESQHQ 392
H HG H HD SS S +
Sbjct: 27 HDHHGHDHHSHDSSSNSSSE 46
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 218 DANHEPQGILEVGSNRKIKSSLTRRSTKTVRLKRKSKLI 334
+A P + + R++ SSLT+++T+T + ++ K +
Sbjct: 567 EATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKV 605
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 489 FVTLSELFDPNSH-IHNTDDSCITTTLLQNRNT 394
F+++ FDP +H +H T + CIT ++ R T
Sbjct: 79 FLSVKGAFDPETHRVHGTRE-CITKSIKTVRET 110
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 593 FVFFEPYDAILTRNVFNISA 534
F F+PYDA + RN++ + A
Sbjct: 111 FEAFDPYDANIQRNMYRMDA 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,438
Number of Sequences: 5004
Number of extensions: 61358
Number of successful extensions: 193
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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