Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060214.seq
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273...    31   1.1  
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377...    30   1.9  
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    29   3.4  
06_01_1188 + 10219546-10219664,10220855-10223660                       28   7.8  
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    28   7.8  

>11_04_0195 -
           14725553-14725571,14725988-14726079,14727214-14727335,
           14727588-14727597,14727798-14727896,14728046-14728612
          Length = 302

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 251 LPKCLAAHDWHRKS*IYHQPKPPQSQIRILLVLSRSRS 138
           +P  L  HD    S +YH P PP+S    LL + +S+S
Sbjct: 155 IPSLLCNHDSGLASSVYHAPPPPRSTPMDLLSVMQSQS 192


>05_07_0283 -
           28937027-28937110,28937211-28937549,28937641-28937754,
           28937843-28937955,28939050-28939087,28939315-28939478,
           28939746-28939794,28940986-28941152
          Length = 355

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 403 ILKKGRGDAAVVRVVNVAIGIKQLRKGYELKPGIQCL 513
           ++ K RGD AV  +VN+A   K  R+G +  PG Q L
Sbjct: 6   VVGKSRGDTAVTTIVNLAEEAKLAREGVK-GPGYQVL 41


>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 390 HWCCDSEEGSW*CSCRPCCECGYWD---QTTPKGLRTKARHPVS 512
           HW  D + G W   C  C E G+ +   Q +P+ LR +  +  S
Sbjct: 112 HWARDCKAGDWKNKCYRCGERGHIERNCQNSPRNLRRERSYSCS 155


>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 111 TRRSMKTPITSGPTQDQKDSYL 176
           TR S+  PI+S  T+D++DSYL
Sbjct: 128 TRYSLIKPISSITTEDERDSYL 149


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 390 HWCCDSEEGSW*CSCRPCCECGYWD---QTTPKGL-RTKARHPVSSRR 521
           HW  D + G W   C  C E G+ +   Q +P+ L R+++R    S R
Sbjct: 159 HWARDCKAGDWKNKCYRCGERGHIERNCQNSPRNLSRSRSRSLSGSPR 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,087
Number of Sequences: 37544
Number of extensions: 400609
Number of successful extensions: 1097
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)