Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060214.seq
(674 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 71 7e-13
SB_43772| Best HMM Match : DUF243 (HMM E-Value=3) 66 2e-11
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037) 31 0.64
SB_844| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_56855| Best HMM Match : Viral_Rep (HMM E-Value=4.5) 30 2.0
SB_52623| Best HMM Match : RnaseH (HMM E-Value=0.7) 29 3.4
SB_30441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 29 3.4
SB_47431| Best HMM Match : GLYCAM-1 (HMM E-Value=3.3) 29 4.5
SB_45874| Best HMM Match : TIR (HMM E-Value=0.43) 29 4.5
SB_15684| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.0
SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38) 28 7.9
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 71.3 bits (167), Expect = 7e-13
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Frame = +2
Query: 32 YLFGGKALTLQSIGRGFARRLTFEPHNSTLNENTNYFWTDSRPE-GFVFEIEAVSVGDKF 208
YLF GKA+ L+ +G G+ +RLTFE + + N N+FW+DS P+ GF F I+ VS G+ F
Sbjct: 9 YLFEGKAVLLERVGAGYGKRLTFE--SEDVLHNDNFFWSDSNPDAGFAFSIQIVSQGETF 66
Query: 209 TIYDANHEPQGILEVGS---NRKIKSSLTRRS--TKTVRLKRKSKL 331
++D + G EV + N++I S S KTV ++ KL
Sbjct: 67 RVFDGSSRYIGEAEVTTILDNQQILGSKMEESGLNKTVTVEFDCKL 112
>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
Length = 472
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +2
Query: 32 YLFGGKALTLQSIGRGFARRLTFEPHNSTLNENTNYFWTDSRP-EGFVFEIEAVSVGDKF 208
+LF G L LQS+G+G+ +RL+FE + NE NYFW+DS P EG+ F I G K+
Sbjct: 202 FLFEGNPLVLQSVGQGYGKRLSFESEDVLYNE--NYFWSDSNPEEGYAFSISLSLGGHKY 259
Query: 209 TIYDANHEPQGILEVGSNRKIKSSLTRRSTKTVRLKRKSKL 331
++ D + G +E+ N + K + ++ V ++ ++K+
Sbjct: 260 SVLDRQGKALGNVEILKNGE-KQVVKKKRFNPVSVELETKV 299
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 537 ADIK-DIPCQYCVVGLEKYELPVIGTYVDPRIIPGFHYRVRPAGS 668
AD K DIP Y + L +ELPV+GT+V ++PGF YRVR G+
Sbjct: 155 ADAKTDIPTTYQIPRLAAHELPVVGTFVHQHVVPGFPYRVRLNGT 199
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 482 PFRSCL--IPIATFTTRTTAASPRPFFRIATPVTGINLIAPSFSYHSTLHSVLILTFFSI 309
PF S + +A F++ TTA PF + T + +L+ P + S L S+ +L F +
Sbjct: 354 PFSSLTTALKLAPFSSLTTAIKLAPFSSLTTTLQACSLLLPYYDPSSLLPSLPLLRPFKL 413
Query: 308 EPSS 297
P S
Sbjct: 414 APFS 417
>SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)
Length = 548
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 71 GRGFARRLTFEPHNSTLNENTNYFWTDSRPEGFVFEIEAVSVGDKFTIYDAN 226
GR RRL N L +T + WT+ + E F E +S T YD N
Sbjct: 147 GRFCFRRLPHGSKNDLLKSDTVWQWTEVQQEAFDKVEEMISTTPVLTFYDPN 198
>SB_844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +2
Query: 101 EPHNSTLNENTNYFWTDSRPEGFVFEIEAVSVGDKFTIYDANHEPQGILEVGSNRKIKSS 280
+P LN+N+ + W +++ + F +A+ IYD++ E + E GS + + +
Sbjct: 80 QPLRGLLNKNSTWLWGEAKQQEFSKIKKAIIQAPALAIYDSSKETESDNE-GSCKTV-AY 137
Query: 281 LTRRSTKT 304
L+R T+T
Sbjct: 138 LSRAITET 145
>SB_56855| Best HMM Match : Viral_Rep (HMM E-Value=4.5)
Length = 158
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 659 WPYAIVEARNDTRIDICANNWKFVFF 582
WP A+ + +T IDI N+W ++ F
Sbjct: 44 WPNALTDCARETWIDIKLNSWYYIVF 69
>SB_52623| Best HMM Match : RnaseH (HMM E-Value=0.7)
Length = 311
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 104 PHNSTLNENTNYFWTDSRPEGFVFEIEAVSVGDKFTIYDAN 226
P N L +T + WT+ + E F E VS T YD N
Sbjct: 18 PMNDLLKSDTVWQWTEVQQEAFDKVKEMVSTTPVLTFYDPN 58
>SB_30441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 161 EGFVFEIEAVSVGDKFTIYDANHEPQ--GILEVGSN 262
E FV ++ A VG KF+I+D P+ G++ GSN
Sbjct: 201 ESFVGKLRANLVGTKFSIFDNGVNPRKGGVMSDGSN 236
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -1
Query: 482 PFRSCLIPIATFTTRTTAASPRPFFRIATP---VTGINLIAPSFSYHSTLHSVLILTFFS 312
PF + P+ TT + PF TP VT L +P+ + +T +L++T +
Sbjct: 20 PFLAATTPLLMVTTSPLTSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTTPLLMVTTST 79
Query: 311 IEPSS*IFWSNST 273
+ P + F + +T
Sbjct: 80 LPPPTIPFLATTT 92
>SB_47431| Best HMM Match : GLYCAM-1 (HMM E-Value=3.3)
Length = 200
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 254 GSNRKIKSSLTRRSTKTVRLKRKSKLIHYVKSSGMKTTALLN*CPS 391
GS++K+K L + V+LK ++ L H ++S + L C S
Sbjct: 4 GSSKKLKHDLNVSGVREVQLKSQASLDHRIQSKQRTNASNLQTCDS 49
>SB_45874| Best HMM Match : TIR (HMM E-Value=0.43)
Length = 876
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 254 GSNRKIKSSLTRRSTKTVRLKRKSKLIHYVKSSGMKTTALLN*CPS 391
GS++K+K L + V+LK ++ L H ++S + L C S
Sbjct: 4 GSSKKLKHDLNVSGVREVQLKSQASLDHRIQSKQRTNASNLQTCDS 49
>SB_15684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 104 PHNSTLNENTNYFWTDSRPEGFVFEIEAVSVGDKFTIYDAN 226
P N L +T + WT+ + E F E +S T YD N
Sbjct: 123 PMNDLLKSDTVWQWTEVQQEAFDKVEEMISTTPVLTFYDPN 163
>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 643 WKPGMIRGSTYVPITGSSY 587
W PG+I GS Y PI SY
Sbjct: 1029 WVPGLIPGSDYCPIPAISY 1047
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 126 SLSVELWGSNVSLRANPRPIDCRVKALPPNKYL 28
S+ VEL+G V+ R RP+ + + PN++L
Sbjct: 1122 SMRVELYGKRVAYRRRMRPLGIQNRRRVPNRHL 1154
>SB_957| Best HMM Match : Lactamase_B (HMM E-Value=0.38)
Length = 236
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 390 HWCCDSEEGSW*--CSCRPCCECGYWDQTT 473
HW +G W C C+ E +WDQ+T
Sbjct: 128 HWYVPMGQGDWIKSCGCQNVKEMEWWDQST 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,550,008
Number of Sequences: 59808
Number of extensions: 453625
Number of successful extensions: 1354
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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