Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060214.seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83222-2|CAB54214.2|  211|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = +2

Query: 41  GGKALTLQSIGRGFARRLTFEPHNSTLNENTNYFWTDSRPEGFVFEI---EAVSVGDKFT 211
           GG  ++L  + R     L F+  +S  NE++NY+ +D +PE  V +I   +     ++  
Sbjct: 475 GGVGMSLMLVIR---TSLEFDGASSFDNEDSNYYNSDEKPEKPVRKIGLYDPFDDDEEMC 531

Query: 212 IYDANHEPQGILEVGSNR 265
           I   + +P+  + +G+NR
Sbjct: 532 ITRVHFDPKSGIVIGTNR 549


>Z83222-2|CAB54214.2|  211|Caenorhabditis elegans Hypothetical
           protein E01B7.2 protein.
          Length = 211

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 176 EIEAVSVGDKFTIYDANHEPQGILEVGSNRKIKSSLTRRSTKTVRLKRKSK 328
           EI  +   D+F I+D N EPQ I  + + +K K      + + + + R SK
Sbjct: 142 EIIKLITNDRFEIHDLNIEPQPIQPILAEKKRKQLRNGPNNRKIVMARYSK 192


>U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical
           protein C01B10.4 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 265 KNQVEFDQKIYEDGSIEKKVKINTLCKVE--WYENDGAIKLMPVTGVAI 405
           K  +EFDQK+ E     K++ + T+  +E    +ND A  L+ V+ +AI
Sbjct: 497 KEMIEFDQKVTETKKKLKQISLKTVPFIEKPLEQNDEAGTLIGVSLIAI 545


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
            protein C35E7.5a protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 477  SELFDPNSHIHNTDDSCITTTLLQNRNTSDGHQFNSAVVFI-PLDF 343
            +E F+   H+   DD+  TTT L+  +  D     S    + PLDF
Sbjct: 1082 NESFEGVEHVEAEDDTQSTTTALEPSDIEDNCDVESTTTAVEPLDF 1127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,991,997
Number of Sequences: 27780
Number of extensions: 348698
Number of successful extensions: 1107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)