Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060214.seq
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15510.1 68417.m02370 photosystem II reaction center PsbP fam...    30   1.6  
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    29   2.1  
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    29   2.1  
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    29   2.1  
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ...    29   2.8  
At2g44070.1 68415.m05481 eukaryotic translation initiation facto...    29   2.8  
At5g60330.1 68418.m07562 expressed protein predicted protein, Ar...    28   6.6  
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    28   6.6  
At4g17330.1 68417.m02600 agenet domain-containing protein contai...    27   8.7  
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi...    27   8.7  

>At4g15510.1 68417.m02370 photosystem II reaction center PsbP family
           protein contains PsbP domain PF01789; identical to
           SP:O23403 (Arabidopsis thaliana)
          Length = 287

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +1

Query: 256 EQQKNQVEFDQKIYEDGSIEKKVKINTLCKVEWYENDGAIKLMPVTGVAILKKGRGDAAV 435
           ++Q N +    ++ +DG +  +V++N    ++ Y N+  + +MP   VA L+  R   AV
Sbjct: 193 KRQANILSTSSRVADDGKLYYQVEVN----IKSYANNNELAVMPQDRVARLEWNRRYLAV 248

Query: 436 VRVVN 450
           + V N
Sbjct: 249 LGVEN 253


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +3

Query: 390 HWCCDSEEGSW*CSCRPCCECGYWD---QTTPKGLR---TKARHPVSSR 518
           HW  D   G W   C  C E G+ +   + +PK LR   + +R PV SR
Sbjct: 68  HWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSR 116


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +3

Query: 390 HWCCDSEEGSW*CSCRPCCECGYWD---QTTPKGLR---TKARHPVSSR 518
           HW  D   G W   C  C E G+ +   + +PK LR   + +R PV SR
Sbjct: 79  HWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSR 127


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +3

Query: 390 HWCCDSEEGSW*CSCRPCCECGYWD---QTTPKGLR---TKARHPVSSR 518
           HW  D   G W   C  C E G+ +   + +PK LR   + +R PV SR
Sbjct: 109 HWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYSRSPVRSR 157


>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 564

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 429 SCRPCCECGYWDQTTPKGLRTKARHPVSSRRVTV 530
           SC  C  C +    T   L  K RHP  SRR+T+
Sbjct: 285 SCYICTLCDFVLHETCANLSKKKRHPSESRRLTL 318


>At2g44070.1 68415.m05481 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|Q63186 Translation initiation factor eIF-2B delta
           subunit (eIF-2B GDP-GTP exchange factor) {Rattus
           norvegicus}; contains Pfam profile PF01008: Initiation
           factor 2 subunit family
          Length = 307

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -2

Query: 616 TYVPITGSSYFSSPTTQY*QGMSLISAPFTVTRLEDTGCRALVRNPFGV 470
           TY  IT  SY     T+   G S + +  TV     T C A+V N F V
Sbjct: 156 TYTHITAISYIMHQVTKVFLGASSVFSNGTVYSRVGTACVAMVANAFRV 204


>At5g60330.1 68418.m07562 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 137

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 385 PVTGVAILKKGRGDAAVVRVVNVAIGIKQLRKGYELKP 498
           P++ + +LKKG  D   +R+V  A G K  + G   KP
Sbjct: 75  PLSSLQVLKKGDVDEYEIRIVIGADGPKSPKDGSSAKP 112


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 429 SCRPCCECGYWDQTTPKGLRTKARHPVSSRRVT--VNGADIKDIPCQYC 569
           SC  C EC Y        L  K RH + + ++T  V+ A   D  C  C
Sbjct: 223 SCYKCVECDYILHKACASLPRKKRHLLHNHKLTLQVDEAASSDFVCTAC 271


>At4g17330.1 68417.m02600 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 1058

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 197 GDKFTIYDANHEPQGILEVGSNRKIKSSLTRRSTKTVRLKRKSKLIHYVKSSGMKT 364
           GDK+     N++     EVGS   I +  T ++TK   +K  S +  + +  G++T
Sbjct: 556 GDKYADLAKNNDVVFEPEVGSKFSIDAQQTIKATKNEDIKEGSNVEVFKEEPGLRT 611


>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
           protein glutamine-rich tetratricopeptide repeat (TPR)
           containing protein (SGT) - Rattus
           norvegicus,PID:e1285298 (SP|O70593); contains Pfam
           profile PF00515 TPR Domain
          Length = 426

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 62  QSIGRGFARRLTFEPHNSTLNEN 130
           ++I +GF + L  +PHN ++ EN
Sbjct: 261 EAIEKGFKKALLLDPHNESVKEN 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,886
Number of Sequences: 28952
Number of extensions: 321735
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)