Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060213.seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)                 28   7.9  
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)                 28   7.9  
SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/70 (30%), Positives = 40/70 (57%)
 Frame = +1

Query: 58  KALELRRYFKSLGAEISEEKSPXGIEDDLHKIVGVCDACFKXPSESDIEAILNXXXXXXX 237
           KA E+R + K  GA++ EE S   ++D+L +I+  C  CFK   ++++E+++N       
Sbjct: 49  KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFK--EDAELESVMNSILSLVL 105

Query: 238 XXPLEREKTL 267
             P +R + +
Sbjct: 106 VVPEKRNELI 115


>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 246 WYRXXNRDNTVQNGFDVRFTRXFETSITNP 157
           WY    R N V+NGFD+     +  ++T+P
Sbjct: 72  WY-GRRRQNCVRNGFDITVLTRYSEAVTHP 100


>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
          Length = 467

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 182 SLKQASQTPTILCRSSSMPLGDFSSEISAPRLLKYLLSSSAFNQERNFIKICM*TH 15
           SL+ ASQ    + R +    GD +  I+AP+L   L       Q  N  K C+ TH
Sbjct: 404 SLRSASQQYLQVKRGNLKTYGDRAFSIAAPKLWNELPFHLRTIQNLNTFKQCLKTH 459


>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -1

Query: 499 CSLXXGXLANSFLSCSTXVKTSLTNPTRAASSMTXXYTW 383
           C L  G   + FLSC   +KT L   T         Y+W
Sbjct: 206 CKLVYGTTFSEFLSCCKRLKTLLLRYTPVRDECFQCYSW 244


>SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = -3

Query: 314 KFRARSXSEPLTKC*DKVFSLSNGIXTIIETILFRMASMSDSLGSLKQASQTPTILCRSS 135
           K + +   E +T   ++  +  N   T+ +     + S+ DSLG     S TP+ +    
Sbjct: 397 KAKKKGHKEHITPQDERFLTRLNVCLTLQKQYRDMLRSLRDSLGGSHSLSITPSGVGPGK 456

Query: 134 SMPLGDFSSEISAP 93
             P+G  +S +  P
Sbjct: 457 KQPIGGSNSNVMTP 470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,066
Number of Sequences: 59808
Number of extensions: 252818
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)