Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060213.seq
         (670 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p pro...   110   1e-24
AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA...   110   1e-24
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    28   10.0 
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    28   10.0 

>AY118924-1|AAM50784.1|  387|Drosophila melanogaster LD23767p
           protein.
          Length = 387

 Score =  110 bits (265), Expect = 1e-24
 Identities = 56/126 (44%), Positives = 77/126 (61%)
 Frame = +3

Query: 252 KGENLILAFSQRLTXAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYXHVIELAARVGFV 431
           +GEN++LA+ +++T AP   LG V LQSLWRL+NNL+  SPLRYHVY H++++A +   V
Sbjct: 80  RGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYHVYYHLVQVAKQCEQV 139

Query: 432 REVFTXVEQLRKEFANXPXXNEQMXXCIXFYIKC*KXKTVN*LLK**LSYWGTYTDGNAS 611
            EVF+ V+QL+ +FAN P  +EQM           K   +    K  +   GTYT  NA 
Sbjct: 140 LEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDVTKDTNLELSSKVMIELLGTYTADNAC 199

Query: 612 YARXXA 629
            AR  A
Sbjct: 200 VAREDA 205



 Score = 83.4 bits (197), Expect = 3e-16
 Identities = 38/67 (56%), Positives = 45/67 (67%)
 Frame = +1

Query: 67  ELRRYFKSLGAEISEEKSPXGIEDDLHKIVGVCDACFKXPSESDIEAILNXXXXXXXXXP 246
           ELR+YFK LGAEIS EKS  G+EDDLHKI+GVCD CFK    S I+ ILN         P
Sbjct: 18  ELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDGILNSIVSIMITIP 77

Query: 247 LEREKTL 267
           L+R + +
Sbjct: 78  LDRGENI 84



 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 27/54 (50%), Positives = 31/54 (57%)
 Frame = +2

Query: 509 LYXLLHQVLKXQNSELAAKVMIELLGHIYRWKCFXCKXXRI*CIAPALAIPNTF 670
           LY LLH V K  N EL++KVMIELLG          +   + CI  ALA PNTF
Sbjct: 166 LYRLLHDVTKDTNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTF 219


>AE013599-1830|AAF58289.1|  387|Drosophila melanogaster CG8309-PA
           protein.
          Length = 387

 Score =  110 bits (265), Expect = 1e-24
 Identities = 56/126 (44%), Positives = 77/126 (61%)
 Frame = +3

Query: 252 KGENLILAFSQRLTXAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVYXHVIELAARVGFV 431
           +GEN++LA+ +++T AP   LG V LQSLWRL+NNL+  SPLRYHVY H++++A +   V
Sbjct: 80  RGENIVLAYCEKMTKAPNLPLGKVCLQSLWRLFNNLDTASPLRYHVYYHLVQVAKQCEQV 139

Query: 432 REVFTXVEQLRKEFANXPXXNEQMXXCIXFYIKC*KXKTVN*LLK**LSYWGTYTDGNAS 611
            EVF+ V+QL+ +FAN P  +EQM           K   +    K  +   GTYT  NA 
Sbjct: 140 LEVFSGVDQLKSQFANCPPSSEQMQKLYRLLHDVTKDTNLELSSKVMIELLGTYTADNAC 199

Query: 612 YARXXA 629
            AR  A
Sbjct: 200 VAREDA 205



 Score = 83.4 bits (197), Expect = 3e-16
 Identities = 38/67 (56%), Positives = 45/67 (67%)
 Frame = +1

Query: 67  ELRRYFKSLGAEISEEKSPXGIEDDLHKIVGVCDACFKXPSESDIEAILNXXXXXXXXXP 246
           ELR+YFK LGAEIS EKS  G+EDDLHKI+GVCD CFK    S I+ ILN         P
Sbjct: 18  ELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVCDVCFKDGEPSQIDGILNSIVSIMITIP 77

Query: 247 LEREKTL 267
           L+R + +
Sbjct: 78  LDRGENI 84



 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 27/54 (50%), Positives = 31/54 (57%)
 Frame = +2

Query: 509 LYXLLHQVLKXQNSELAAKVMIELLGHIYRWKCFXCKXXRI*CIAPALAIPNTF 670
           LY LLH V K  N EL++KVMIELLG          +   + CI  ALA PNTF
Sbjct: 166 LYRLLHDVTKDTNLELSSKVMIELLGTYTADNACVAREDAMKCIVTALADPNTF 219


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
            ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 61   ALELRRYFKSLGAEISEEKSPXGIED 138
            ++ LRR+++ L  E+S+ K P G+ED
Sbjct: 4753 SMVLRRHYRHLREELSKLKPPRGLED 4778


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
            protein.
          Length = 4876

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 61   ALELRRYFKSLGAEISEEKSPXGIED 138
            ++ LRR+++ L  E+S+ K P G+ED
Sbjct: 4753 SMVLRRHYRHLREELSKLKPPRGLED 4778


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,228,000
Number of Sequences: 53049
Number of extensions: 363886
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)