Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060212.seq
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.45
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 28 1.4
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 1.8
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 1.8
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 2.4
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 27 3.1
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 3.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 26 4.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 7.3
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 7.3
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.6
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 25 9.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 9.6
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 9.6
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.6
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.45
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -1
Query: 514 RLQHIIFALSMNSNHSKVLDSDSTTPAQAIQLEFP 410
R+ H++FA S SN K++++ S+TP + + LE P
Sbjct: 20 RVAHLVFANSHESNDLKMVENVSSTPKKGV-LEDP 53
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 290 SVAGSDCSDHSALHHLRSDLGTRAPSPLDCYR 195
+ A + C L HL+S + T +PS +D Y+
Sbjct: 528 TAALASCGSDKLLRHLKSCVNTHSPSTVDLYQ 559
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 462 SLILIAPLRLKRFSLNSHSYQTFSDMEHPVLGVLP 358
S I +AP+ ++RF S+ T DM+ LP
Sbjct: 474 STIYVAPVNIRRFQGRDLSFSTLKDMKFEETSFLP 508
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 311 ERLPSPSACGPNLPPRGRTPSTGCSMSENVW 403
ERL +P C P+ P G MS+ +W
Sbjct: 58 ERLVAPFNCSPSSTPLQDVAGVGSKMSDTLW 88
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 62 QGLLQKGYRLIMSNYDALYFDCGFG 136
+GLLQ+ + L+ N +ALY FG
Sbjct: 46 KGLLQQCFNLVKKNMEALYRQSSFG 70
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 395 SLTWSIRCSASCHAVEGSAHMRSAKAAALGHSRPSSVAGSDCSDHSA 255
S T S S++ A GSA + A +S SS + S S H +
Sbjct: 351 SATSSYDLSSTVSATSGSATSATGSATTTSYSSDSSASSSSSSSHES 397
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 547 SIVCLCYLLFIRLQHII 497
S++ LCYL+FI L H I
Sbjct: 169 SLIALCYLVFIVLYHFI 185
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 215 SPLDCYRTLSATRCTVNTNYYQTQPMPRIHSQSTERHSLT*SGD 84
+P +R + TRCT + N + + S ST +T SGD
Sbjct: 113 TPQAVFRVRAVTRCTASMNGHDGTIISAQFSPSTSSRLVTGSGD 156
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 234 SRYESAITAGLLPYTFCHPMYGEH--QLLPDPTHAPNPQSKYRAS*FDII 91
++YES++ A L Y +YG+H ++L + H Q+K D+I
Sbjct: 531 TKYESSLKAELEVYKQIKEIYGKHSVEVLTEDKHLQVKQTKLTQKLEDLI 580
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 269 SDHSALHHLRSDLGTRAP 216
SDHS L+H +S+ T P
Sbjct: 195 SDHSTLYHSKSEFSTNEP 212
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 301 LWPRAAAFAERMWAEPSTAWQDAEHRMLHVRERLVRM 411
L+P A F E + E + + H+++HVR LV++
Sbjct: 557 LFPLDAQFLEVISDEKNEEFPAYPHKLVHVRPELVQL 593
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 325 AERMWAEPSTAWQDAEHRMLHVRERLVRMGIQAESLEPEWCY 450
+E+ W+ ++ + H +HV E + I+ S E C+
Sbjct: 345 SEKSWSTATSILKRESHSFIHVHENVKDEDIETYSSEVNSCF 386
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.6
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = -3
Query: 395 SLTWSIRCSASCHAVEGSAHMRSAKAAALGHSRPSSVAG-SDCSDHSALHHLRSDLGTRA 219
S ++SI S+S + EG+ S +PS + S S + A + L T
Sbjct: 899 STSYSIPSSSSRN--EGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTE- 955
Query: 218 PSPLDCYRTLSATRCTVNTNYYQTQPMPRIHSQST 114
P TLS + ++NTN +P + S +T
Sbjct: 956 PKTFSSSSTLSESISSINTNSLTVKPESSLSSSTT 990
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 191 VYGNSPAVMALSYRDQILGGEERCGLSSQT---LPRWTADCGPERLPSPS 331
VYG++PA A + + R Q +PRW +D LP PS
Sbjct: 54 VYGSTPAGGAEWCSEALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKPS 103
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 354 GGRFGPHALGEGSR 313
G RFGP +L EGSR
Sbjct: 80 GARFGPSSLREGSR 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,643
Number of Sequences: 5004
Number of extensions: 66262
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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