Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060212.seq
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0187 - 6248226-6249226,6249296-6250148 73 2e-13
07_03_1000 - 23220878-23221821,23222164-23223001 73 3e-13
10_08_0008 - 14046647-14047462,14050744-14051499 32 0.46
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 31 0.81
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001 31 1.1
03_02_0894 + 12226006-12226484,12226601-12226709 31 1.1
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 30 1.4
04_04_1041 - 30329037-30329102,30329199-30329352,30329606-303297... 30 1.4
06_03_0252 + 18747333-18747448,18747668-18747734,18747938-187480... 30 1.9
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511... 29 3.3
07_03_1139 + 24254662-24255306 29 4.3
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 28 5.7
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 28 5.7
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 28 7.5
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 28 7.5
03_05_0267 - 22538631-22539452 28 7.5
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 28 7.5
02_04_0348 - 22199564-22200412 28 7.5
02_01_0434 + 3158637-3159319,3159460-3159576,3160064-3160226,316... 28 7.5
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 28 7.5
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 27 9.9
12_02_0407 - 18654134-18654172,18654913-18655803 27 9.9
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 27 9.9
05_03_0506 - 14801920-14802219 27 9.9
04_03_0703 - 18870287-18871351,18871542-18871733 27 9.9
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 73.3 bits (172), Expect = 2e-13
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Frame = +1
Query: 256 ALWSEQSDPATLDGRLWPRAAAFAERMW-----AEPSTAWQDAEHRMLHVRERLVRMGIQ 420
ALWSEQSD LD RLWPRAAA AE +W + + +A R+ R R+V GI+
Sbjct: 538 ALWSEQSDETVLDARLWPRAAAAAETLWSGNKGSNGKKRYANATDRLNDWRHRMVERGIR 597
Query: 421 AESLEPEWCYQNQGLC 468
AE ++P WC + G+C
Sbjct: 598 AEPIQPLWCSLHPGMC 613
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 23/85 (27%)
Frame = +2
Query: 11 KDEYIIQVWTTGADPQIQGLLQKGYRLIMSNYDALYFDCGFGAWV--------------- 145
++ I+Q W G + + ++ GYR I+S+ Y DCG G WV
Sbjct: 433 RETTILQTWNDGPE-NTKRVVAAGYRAIVSSASYYYLDCGHGGWVGNDSRYDKQEKEREG 491
Query: 146 --------GSGNNWCSPYIGWQKVY 196
G+G +WC+P+ WQ+VY
Sbjct: 492 TPLFNDPGGTGGSWCAPFKTWQRVY 516
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Frame = +1
Query: 256 ALWSEQSDPATLDGRLWPRAAAFAERMWAEPSTA-----WQDAEHRMLHVRERLVRMGIQ 420
A+W+EQ D A LDGR+WPRA+A AE +W+ A + +A R+ R R+V G++
Sbjct: 514 AMWTEQVDAAVLDGRVWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVGRGVR 573
Query: 421 AESLEPEWCYQNQGLC 468
AE ++P WC G+C
Sbjct: 574 AEPIQPLWCRNRPGMC 589
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Frame = +2
Query: 23 IIQVWTTGADPQIQGLLQKGYRLIMSNYDALYFDCGFGAWVG--------------SGNN 160
I+Q W G + + +++ GYR I+S+ Y DCG G + G SG +
Sbjct: 422 ILQTWNNGGN-NTRLIVRAGYRAIVSSASFYYLDCGHGDFAGNDSAYDDPRSDYGTSGGS 480
Query: 161 WCSPYIGWQKVY 196
WC PY WQ+VY
Sbjct: 481 WCGPYKTWQRVY 492
>10_08_0008 - 14046647-14047462,14050744-14051499
Length = 523
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 235 SDLRW*RALWSEQSDPATLDGRLWPRAAAFAERMWAEPSTAWQDAEHR 378
S +RW RALWS+ L G L P A A A WA A+ A R
Sbjct: 56 STMRWARALWSD------LAGELGPSAPALAVACWAAALAAYTYAASR 97
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = -3
Query: 338 HMRSAKAAALGH----SRPSSVA--GSDCSDHSALHHLRSDLGTRAPSPLDCYRT 192
H R K +L H S P ++ G+ C D+S +H+L S + + SP C T
Sbjct: 439 HSREWKQDSLPHQPKNSSPGTIGKLGTKCQDNSTVHNLFSPVNQQLESPTQCIST 493
>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
Length = 708
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 401 KRSLTWSIRCSASCHAVEGSAHMRSAKAAALGHSRPSSVAGSDCSDHSAL 252
+R++ W R A+ A G AH+ +A + A G+ + S++ D +AL
Sbjct: 503 RRTMDWDARMRAALSAARGVAHLHAAHSLAHGNLKSSNLLLRPDPDATAL 552
>03_02_0894 + 12226006-12226484,12226601-12226709
Length = 195
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 329 SAKAAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSPLD 204
+A+ A + +P S+ C +HHL S GT PSPLD
Sbjct: 45 TAQQAPFTYPQPPSLTKKIC-----IHHLHSPAGTHLPSPLD 81
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 379 MLHVRERLVRMGIQAESLEPEWCYQNQG 462
+ H + ++R G Q ESL EW QN+G
Sbjct: 1143 LCHTKGLVIRGGTQLESLPEEWLLQNRG 1170
>04_04_1041 -
30329037-30329102,30329199-30329352,30329606-30329733,
30329918-30330043,30330545-30330675,30331091-30331304,
30332056-30332061,30332216-30332246,30332410-30332867,
30332992-30333136,30333255-30333712,30336945-30337085,
30337146-30337158,30337611-30337636
Length = 698
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = -3
Query: 371 SASCHAVEGSAHMRSAKAAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSP 210
S SC A+ SA +A AA+ + SVA D SDH HH L + A P
Sbjct: 295 SMSCKAMAASASNYAAAAASTRAACYPSVAVPDPSDHVWAHHFNM-LNSAAAGP 347
>06_03_0252 +
18747333-18747448,18747668-18747734,18747938-18748068,
18748098-18748209
Length = 141
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 268 EQSDPATLDGRLWPRAAAFAERMWAEPSTAWQDAEHRM 381
E+++P GRL + W P T+W D E M
Sbjct: 97 ERAEPGRARGRLGHGVIYVSVMAWTRPKTSWMDTEFNM 134
>10_02_0086 -
5112095-5112185,5112487-5112599,5113325-5113431,
5113782-5113860,5114000-5114089,5114628-5114882,
5117025-5117174,5117634-5117933
Length = 394
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 277 DPATLDGRLWPRAAAFAERMWAEPSTAWQDAEHRMLHVRERLVRM 411
D +T DG++W + AF + ++A P A ++ + R+ +++M
Sbjct: 114 DSSTSDGKMWKQYDAFTQGLFAFPLCIPGTAFYKCMQGRKNVIKM 158
>07_03_1139 + 24254662-24255306
Length = 214
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 308 PERLPSPSACGPNLPPRGRTPS 373
P P P+ P+LPP GR PS
Sbjct: 152 PAHRPDPATAVPHLPPLGRDPS 173
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 371 SASCHAVEGSAHMRSAKAAALGHSRPSSVAGSDCSDHSALHH 246
S + ++EG R K + S+PS+ AGS+ DHSAL +
Sbjct: 651 STASRSIEGD-ESRKYKGSLEYISQPSTPAGSNKDDHSALQN 691
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 259 LWSEQSDPATLDGRLWPRAAAFA 327
+W E +D + + +WPRAAA A
Sbjct: 423 MWGETADTSDVQQTIWPRAAAAA 445
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 377 RCSASCHAVEGSAHMRSA---KAAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSPL 207
RC SC GS R+A A A GH PS VA S S + + S L +R L
Sbjct: 213 RCM-SCAFDIGSCTARTALRCAAGAAGHRDPSRVASEMLSLFSKAYKIASHLLSRTADRL 271
Query: 206 DC 201
C
Sbjct: 272 TC 273
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Frame = +2
Query: 305 GPERLPSPSAC---GP-NLPPRGRTPS 373
GPE+LP S+C GP LPP R P+
Sbjct: 719 GPEQLPRSSSCPSIGPGGLPPSSRAPA 745
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 PRWTADCGPERLP-SPSACGPNLPPRGRTPSTGCS 385
PRW C P P SPS P +PS GCS
Sbjct: 178 PRWWP-CSPSSPPASPSPSPARTSPPSSSPSRGCS 211
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 365 SCHAVEGSAHMRSAKAAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSP 210
SC A SA S AA ++ + AGS + HLR + T +P P
Sbjct: 21 SCKAASASASPESVSVAASSPAQAAPPAGSPLRPFALRAHLREE-ATPSPQP 71
>02_04_0348 - 22199564-22200412
Length = 282
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 472 HSKVLDSDSTTPAQAIQLEFPFLPNVL*HGASGARRPATRWKVRPTCARRRQPL 311
H + L +D+ P ++ P +L G RPA R+ +R A RR+PL
Sbjct: 103 HLRFLSADAPLPPPLLRAAVVRSPRLLAASVPGTLRPALRF-LRRRVALRRRPL 155
>02_01_0434 +
3158637-3159319,3159460-3159576,3160064-3160226,
3160394-3160600
Length = 389
Score = 27.9 bits (59), Expect = 7.5
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +2
Query: 257 RCGLSSQTLPRWTADCGPERLPSPS------ACGPNLPPRGRTPSTGCSMSENVW*EWEF 418
R G+S PR G ER PSPS P P + P+ M N+
Sbjct: 170 RRGMSKVYKPRKPQRAGRERSPSPSPVFTTRPMSPTPPMQKLKPAHTTVMVRNI------ 223
Query: 419 KLNRLSRSGAIRIKDFAMVRVHRQR 493
N+L+RS +R+ D R +R+R
Sbjct: 224 -PNKLTRSDMVRLLDDHCARENRRR 247
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 529 YLLFIRLQHIIFALSMNSNHSKVLDSDSTTPAQAIQLE 416
YLL ++++ I+ AL H KVLD + A Q E
Sbjct: 390 YLLVLQVEMILQALEYEKEHGKVLDEFFLSTAGKFQTE 427
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 182 WQKVYGNSPAVMALSYRDQILGGEERCGLSSQTLPRWTADC 304
W+ + + PAV A+ R G E++ ++T+PRW C
Sbjct: 95 WRDIVLSRPAVNAVDQR----GEEDQAFKKARTVPRWLQGC 131
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +2
Query: 53 PQIQGLLQKGYRLIMSNYDALYFDCGFGAWVGSGNNWCSPY 175
P + L GY I Y ++ S ++WCSP+
Sbjct: 150 PLVVSCLSFGYHPITGRYKIVHLPADDAMAAASSSSWCSPF 190
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 27.5 bits (58), Expect = 9.9
Identities = 25/77 (32%), Positives = 35/77 (45%)
Frame = -1
Query: 547 SIVCLCYLLFIRLQHIIFALSMNSNHSKVLDSDSTTPAQAIQLEFPFLPNVL*HGASGAR 368
S+VCL LL I L + A S S D+D T A + +F N+L G
Sbjct: 5 SLVCLSALLLIPLSTVSAASSPGLTESSNNDTD-LTALLAFKAQFHDPDNIL-AGNWTPG 62
Query: 367 RPATRWKVRPTCARRRQ 317
P +W V +C+R +Q
Sbjct: 63 TPFCQW-VGVSCSRHQQ 78
>05_03_0506 - 14801920-14802219
Length = 99
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 378 PVLGVLPRGGRFGPHALGEGSRSGPQSAVQRGRV 277
P +G GGR G G G R G QS + G V
Sbjct: 65 PAVGGEGEGGRGGRGGFGSGERRGGQSRGREGHV 98
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 290 WTADCGPERLPS-PSACGPNLPPRGRTPSTGCSMS 391
W ADC R PS P+ P PSTG S S
Sbjct: 219 WLADCRTRRAPSAPTGDPPPARAAAGPPSTGSSTS 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,787,268
Number of Sequences: 37544
Number of extensions: 515465
Number of successful extensions: 1696
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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