Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060212.seq
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              43   3e-04
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)         31   0.83 
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              31   1.1  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    30   1.9  
SB_54617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_1963| Best HMM Match : rve (HMM E-Value=0.022)                      29   2.5  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 29   3.3  
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)                   28   5.8  
SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)                    28   5.8  
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 259 LWSEQSDPATLDGRLWPRAAAFAERMWA 342
           +W E   P T+D R+WPR AA AER W+
Sbjct: 258 MWGELVTPLTIDSRIWPRTAAIAERFWS 285


>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 259 LWSEQSDPATLDGRLWPRAAAFAERMWAEPST 354
           +W E  D   +  R WPRA A AER+W+  ST
Sbjct: 561 MWGEFVDGTNILARTWPRALAIAERLWSSKST 592


>SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)
          Length = 403

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 256 ALWSEQSDPAT-LDGRLWPRAAAFAERMWAEPSTAWQDAE 372
           ALW+E    A  +D  ++PR  A AER W + S  W+D +
Sbjct: 182 ALWTETVRTADQMDSMVFPRLLALAERAWHKAS--WEDVK 219


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256  ALWSEQSDPAT-LDGRLWPRAAAFAERMWAEPSTAWQD 366
            ALW+E    A  +D  ++PR  A AER W + S  W+D
Sbjct: 1501 ALWTETVRTADQMDSMIFPRLLAVAERAWHKAS--WED 1536



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 32   VWTTGADPQIQGLLQKGYRLIMSNYDALYFDCGFGAWVGS-GNNWCSPYIGWQKVYGNSP 208
            +W  G+  +   L   GY+++M+    LYFD  +       G  W + +   +K +G  P
Sbjct: 1399 IWEWGSGKRAYLLANAGYKVVMTQATHLYFDFPYEPDPQERGYYWATRFTDTRKTFGFMP 1458

Query: 209  AVMALSYRDQILG 247
              +  +   ++ G
Sbjct: 1459 DNLFNNVEQKVTG 1471


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 335  MRSAKAAALGHSRPSSVAGSDCSDHSALHH 246
            +  A  A+  H RPSSV  S+ S   A+HH
Sbjct: 974  LAQAHQASSSHQRPSSVLNSEASFSGAVHH 1003


>SB_54617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 278 TLPRWTADCGPERLPSPSACGPNLPPRGRTPSTGCSMSE 394
           TL + T +CG   L +PSA   ++      PSTG  ++E
Sbjct: 17  TLSKKTRECGTRALVTPSAMNDSMSGSTVLPSTGYGLTE 55


>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
          Length = 931

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 320 AAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSPL 207
           A +L +SRP +  G DC D  AL   R  LG  +P+ L
Sbjct: 772 AGSLMNSRPLTHLGGDCRDEEALTPNRFLLGRASPNRL 809


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
 Frame = +2

Query: 284 PRWTADCGPE--RLPSPSACGPNL-----PPRGRTP 370
           PR++   GP+  R PSPS  GP       PPRGR+P
Sbjct: 693 PRYSTPQGPDYHRRPSPSPPGPPRNAPYGPPRGRSP 728


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = -3

Query: 377 RCSASCHAVEGSAHMRSAKAAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSPLDCY 198
           R  AS H    S+  +S   A+L H R SS +    S    LHH R+   +R  + L  Y
Sbjct: 535 RVLASLHHYRNSS--KSRVLASLHHYRNSSKSRVLAS----LHHYRNSSKSRVLASLHHY 588

Query: 197 RTLSATRCTVNTNYYQ 150
           R  S +R   + ++Y+
Sbjct: 589 RNSSKSRVLASLHHYR 604



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -3

Query: 332 RSAKAAALGHSRPSSVAGSDCSDHSALHHLRSDLGTRAPSPLDCYRTLSATRCTVNTNYY 153
           +S   A+L H R SS +    S    LHH R+   +R  + L  YR  S +R   + ++Y
Sbjct: 533 KSRVLASLHHYRNSSKSRVLAS----LHHYRNSSKSRVLASLHHYRNSSKSRVLASLHHY 588

Query: 152 QTQPMPRI 129
           +     R+
Sbjct: 589 RNSSKSRV 596


>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1134

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 505 AAAL*IINNKDRQYYPKTHRNFF--RITKIKRNSFALFCYMKKWCYLTTRFL 654
           AA L  +++K     P+   N+   ++ K++R +       ++W Y TTR+L
Sbjct: 23  AAVLITVHSKGSHTTPEAQANYSSTKVEKVRRPTITTAGTSEEWSYFTTRWL 74


>SB_51798| Best HMM Match : DUF635 (HMM E-Value=1.6)
          Length = 372

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 505 AAAL*IINNKDRQYYPKTHRNFF--RITKIKRNSFALFCYMKKWCYLTTRFL 654
           AA L  +++K  Q  P+   N    ++ K++R +       ++W Y TTR+L
Sbjct: 23  AAVLITVHSKGSQTTPEAQANCSSTKVEKVRRPTITTAGTSEEWSYFTTRWL 74


>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 505 AAAL*IINNKDRQYYPKTHRNFF--RITKIKRNSFALFCYMKKWCYLTTRFL 654
           AA L  +++K  Q  P+   N    ++ K++R +       ++W Y TTR+L
Sbjct: 23  AAVLITVHSKGSQTTPEAQANCSSTKVEKVRRPTITTAGTSEEWSYFTTRWL 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,205,892
Number of Sequences: 59808
Number of extensions: 537470
Number of successful extensions: 1605
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)