Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060212.seq
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    54   9e-08
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    54   9e-08
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z22179-11|CAA80164.1|  444|Caenorhabditis elegans Hypothetical p...    28   5.1  
AF287259-1|AAG24513.1|  444|Caenorhabditis elegans gamma-tubulin...    28   5.1  
Z81118-2|CAB03324.2|  318|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +1

Query: 256 ALWSEQSDPATLDGRLWPRAAAFAERMW--AEPSTAWQDAEHRMLHVRERLVRMGIQAE- 426
           A+W E  D   ++ RLWPRA+A AER+W  AE +   +DA  RM  +R RLV  G + + 
Sbjct: 475 AIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQRAEDAWPRMHELRCRLVSRGYRIQP 534

Query: 427 SLEPEWC 447
           +  P++C
Sbjct: 535 NNNPDYC 541


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +1

Query: 256 ALWSEQSDPATLDGRLWPRAAAFAERMW--AEPSTAWQDAEHRMLHVRERLVRMGIQAE- 426
           A+W E  D   ++ RLWPRA+A AER+W  AE +   +DA  RM  +R RLV  G + + 
Sbjct: 475 AIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQRAEDAWPRMHELRCRLVSRGYRIQP 534

Query: 427 SLEPEWC 447
           +  P++C
Sbjct: 535 NNNPDYC 541


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 YFDCGFGAWVGSGNNWCSPYIGWQKVY 196
           Y+ CGFG   G    W +PY+G+ K +
Sbjct: 87  YWSCGFGFSYGDIPEWRNPYVGFGKFF 113


>Z22179-11|CAA80164.1|  444|Caenorhabditis elegans Hypothetical
           protein F58A4.8 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 14  DEYIIQVWTTGADPQ-IQGLLQKGYRLIMSNYDALYFDCGFGAWVGSGNNWCSPYIGWQK 190
           D Y+ +      +P+ I G++Q      + N D ++     G   G+GNNW S Y   Q+
Sbjct: 59  DHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGG---GAGNNWASGYCQGQE 115

Query: 191 V 193
           V
Sbjct: 116 V 116


>AF287259-1|AAG24513.1|  444|Caenorhabditis elegans gamma-tubulin
           protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 14  DEYIIQVWTTGADPQ-IQGLLQKGYRLIMSNYDALYFDCGFGAWVGSGNNWCSPYIGWQK 190
           D Y+ +      +P+ I G++Q      + N D ++     G   G+GNNW S Y   Q+
Sbjct: 59  DHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGG---GAGNNWASGYCQGQE 115

Query: 191 V 193
           V
Sbjct: 116 V 116


>Z81118-2|CAB03324.2|  318|Caenorhabditis elegans Hypothetical
           protein T10G3.1 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 191 VYGNSPAVMALSYRDQILGGEERCGLS-SQTLPRWTADCGPERLPSPSA 334
           V G  P+  + +  DQ    E +  +S S T+P++  D   + LP P A
Sbjct: 154 VVGEDPSYYSTTPSDQQASAEAKAWISVSTTVPKFEGDIDEDDLPPPPA 202


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 456 ILIAPLRLKRFSLNSHSYQTFS----DMEHPVLGVLPRG 352
           +++   +L+ ++LNS SYQ  S    D+EH ++  L RG
Sbjct: 432 VVLRDYKLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQRG 470


>AL021503-4|CAA16418.1|  352|Caenorhabditis elegans Hypothetical
           protein Y68A4A.7 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 614 QNKAKEFLFILVIRKKLR*VLG*YCLSLLFIIHKAAAHY 498
           QNK K FLF ++ +  +  +LG   LSL  I + A+ HY
Sbjct: 250 QNKQKVFLFCILFQTSVPIILGVCPLSLCCIAY-ASGHY 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,887,001
Number of Sequences: 27780
Number of extensions: 389105
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)