Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060212.seq
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.84 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.84 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.84 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.84 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.8  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   7.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   7.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 284 PRWTADCGPERLPSPSACGPNLPPRGRTPSTGCS 385
           P   A  GP  + + + CGPN  P   T + GC+
Sbjct: 413 PPTGATTGPNEIVTCTNCGPN--PCTHTTTNGCT 444


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 284 PRWTADCGPERLPSPSACGPNLPPRGRTPSTGCS 385
           P   A  GP  + + + CGPN  P   T + GC+
Sbjct: 399 PPTGATTGPNEIVTCTNCGPN--PCTHTTTNGCT 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 284 PRWTADCGPERLPSPSACGPNLPPRGRTPSTGCS 385
           P   A  GP  + + + CGPN  P   T + GC+
Sbjct: 433 PPTGATTGPNEIVTCTNCGPN--PCTHTTTNGCT 464


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 284 PRWTADCGPERLPSPSACGPNLPPRGRTPSTGCS 385
           P   A  GP  + + + CGPN  P   T + GC+
Sbjct: 382 PPTGATTGPNEIVTCTNCGPN--PCTHTTTNGCT 413


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 153  PDPTHAPNPQSKYRAS*FDIIRRYPFW 73
            P     P  Q  + AS  D  RRY FW
Sbjct: 1225 PTSQKVPPNQLTHEASELDKTRRYDFW 1251


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 530 LFIIHKAAAHYLRVVYE 480
           L ++ K+ AH+++ +YE
Sbjct: 49  LILVKKSTAHFVKDIYE 65


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 358 TRWKVRPTCARRRQ 317
           T WKVRP+    R+
Sbjct: 583 TEWKVRPSTVEERE 596


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 LNNTIFSCNKIKQRNSSLFWLFEKSCDE 557
           + N +   NKIK+ ++ L    EKS +E
Sbjct: 179 IKNVLTKINKIKEHDTVLVVNIEKSGNE 206


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 LNNTIFSCNKIKQRNSSLFWLFEKSCDE 557
           + N +   NKIK+ ++ L    EKS +E
Sbjct: 179 IKNVLTKINKIKEHDTVLVVNIEKSGNE 206


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 LNNTIFSCNKIKQRNSSLFWLFEKSCDE 557
           + N +   NKIK+ ++ L    EKS +E
Sbjct: 179 IKNVLTKINKIKEHDTVLVVNIEKSGNE 206


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 LNNTIFSCNKIKQRNSSLFWLFEKSCDE 557
           + N +   NKIK+ ++ L    EKS +E
Sbjct: 184 IKNVLTKINKIKEHDTVLVVNIEKSGNE 211


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 LNNTIFSCNKIKQRNSSLFWLFEKSCDE 557
           + N +   NKIK+ ++ L    EKS +E
Sbjct: 179 IKNVLTKINKIKEHDTVLVVNIEKSGNE 206


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 LNNTIFSCNKIKQRNSSLFWLFEKSCDE 557
           + N +   NKIK+ ++ L    EKS +E
Sbjct: 179 IKNVLTKINKIKEHDTVLVVNIEKSGNE 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,413
Number of Sequences: 438
Number of extensions: 5531
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)