Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060211.seq
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    49   6e-07
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   1.5  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    27   2.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   3.5  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   8.1  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 22/79 (27%), Positives = 42/79 (53%)
 Frame = +2

Query: 257 LREQLXLTLXMDLSQXLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNXK 436
           L+ QL      +    +R K+CD ++E+AR+  D  G  +WPE +  +F   ++ D + +
Sbjct: 99  LQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQG--EWPELINVIFNAVNSPDESFR 156

Query: 437 EAGIRMFTSVPGVFGNRQT 493
           E+  R  TS+P +   + +
Sbjct: 157 ESVFRTITSLPRLLSGQDS 175


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 113 CFCWNVVVCVLCL 75
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 400 VYLCQCARSKHXRSWY*NVYVCTRCIWK 483
           ++LC+   S H RS+  ++ +C +C+ K
Sbjct: 243 IFLCKVLESSHLRSFAEDLSMCFKCVKK 270


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 45  LLSTDNDIRSQAEDAYNNIP-TETKVVHLXNSIQNADIAE 161
           L S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 3   HEGDQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHL 128
           +EG  A  + L N+L  TD  +RSQ+      +  +   +HL
Sbjct: 418 NEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHL 459


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -1

Query: 580 AFNLHEFAKPLIHLAA----KQILTCLLHIQVFSLTISKYTWYRRKHSNTSF 437
           AF ++      IHL      K +L   + + V  + +S Y W RR H  TSF
Sbjct: 225 AFAVYLLKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSF 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,592
Number of Sequences: 5004
Number of extensions: 43334
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)