Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060211.seq
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    45   4e-05
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    43   2e-04
10_08_0616 + 19286014-19286928                                         29   3.6  
12_01_0750 - 6754126-6755248,6755331-6755791                           28   4.7  
01_07_0224 - 42121011-42122486                                         28   6.2  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    27   8.2  

>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +2

Query: 221 VLPEIAI*AADMLREQLXLTLXMDLSQXLRRKVCDVVSELARNHIDDDGNNQWPEFLQFM 400
           V P ++      L++ L   L  D  + + +KVCD +SELA   + +   N W E L F+
Sbjct: 99  VWPHLSPAGQAALKQHLLSALQSDPPKPIAKKVCDAISELAALLLPE---NAWAELLPFL 155

Query: 401 FTCASAQD-PNXKEAGIRMF 457
           F  AS  + PN +E+ + +F
Sbjct: 156 FRAASGPEAPNLQESALLIF 175



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
 Frame = +3

Query: 9   GDQAQFYQLLNTLLSTDNDIRSQAEDAYNNIP---TETKVVHLXNSIQNADIAEDVRQTA 179
           GD A F  LL+TL+S+ N  R+ AE A++ +     E   + L +S+ +     D+R  A
Sbjct: 16  GDPAAFDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRAMA 75

Query: 180 AVLIRRLFS 206
           AVL+R+L S
Sbjct: 76  AVLLRKLLS 84


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 48/93 (51%)
 Frame = +2

Query: 227 PEIAI*AADMLREQLXLTLXMDLSQXLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFT 406
           P++   A   L++ L  ++ +D S  +RR   +VVS +A+  +      +WPE L F+F 
Sbjct: 69  PKLPPHAKASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPA---GEWPELLPFIFQ 125

Query: 407 CASAQDPNXKEAGIRMFTSVPGVFGNRQTENLD 505
           C+ +   + +E  + +F+S+    G     +L+
Sbjct: 126 CSQSPQEDHREVALILFSSLTETIGTTFQSHLN 158



 Score = 33.9 bits (74), Expect = 0.095
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 33  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLXNSIQNADIAEDVRQTAAVLIRR 197
           LL   L  DND R QAE+    +  + +VV  L + ++ A    +VRQ AAVL+R+
Sbjct: 8   LLIQFLMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRK 62


>10_08_0616 + 19286014-19286928
          Length = 304

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 15  QAQFYQLLNTLLSTDNDIRSQAEDAYNNIP 104
           Q++ Y+ +   +S DND     +DA NN+P
Sbjct: 124 QSKLYEEIKATMSGDNDDEINEDDARNNLP 153


>12_01_0750 - 6754126-6755248,6755331-6755791
          Length = 527

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 526 ILTCLLHIQVFSLTISKYTWY 464
           +L+CLLH QVF L++  Y  Y
Sbjct: 20  LLSCLLHFQVFHLSLFPYPSY 40


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 335 ELARNHIDDDGNNQWPEFLQFMF 403
           +L    ++D G  +WP F+QF F
Sbjct: 7   DLGGGGVEDGGGKKWPGFVQFFF 29


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 33  LLNTLLSTDNDIRSQAEDAYNN 98
           LL TLLS D D+R  A DA N+
Sbjct: 375 LLETLLSIDPDMRGTATDALNS 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,381
Number of Sequences: 37544
Number of extensions: 282192
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)