Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060211.seq
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     84   7e-17
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   2.8  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 35/88 (39%), Positives = 57/88 (64%)
 Frame = +2

Query: 251 DMLREQLXLTLXMDLSQXLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPN 430
           ++++E L   +  +    +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    
Sbjct: 56  NLMKESLLKGIHEEQDSNVRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAE 115

Query: 431 XKEAGIRMFTSVPGVFGNRQTENLDV*K 514
            KE+ + +F S PGVFGN+Q   L+V K
Sbjct: 116 LKESALNIFCSFPGVFGNQQDHYLNVIK 143



 Score = 27.9 bits (59), Expect(2) = 0.029
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 21 QFYQLLNTLLSTDNDIRSQAE 83
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 26.6 bits (56), Expect(2) = 0.029
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +3

Query: 162 DVRQTAAVLIRRLFSA 209
           +VRQ AAVL+RR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 314 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 430
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,659
Number of Sequences: 59808
Number of extensions: 329304
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)